Pairwise Alignments

Query, 385 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 384 a.a., antibiotic transporter from Pseudomonas simiae WCS417

 Score =  120 bits (300), Expect = 8e-32
 Identities = 110/391 (28%), Positives = 172/391 (43%), Gaps = 47/391 (12%)

Query: 5   VLLLVAALALGKFLQ-IRALIAAVPKPGPQT-VSTVEVQKLQWQSQFTAVGTLNPVRGAD 62
           V  LV A+AL   L   +   AA P   PQ  V T++ Q     S+    G     R A+
Sbjct: 7   VTALVTAVALASLLSGCKKEEAAPPAQIPQVGVVTIQPQAFTLTSELP--GRTTAYRIAE 64

Query: 63  LSTEVAGLVRNVHFKSGQDVKAGALLVELNADSDIALLHSAEAAAAQAATVLKRDQAQLA 122
           +  +V G++    FK G DVK G  L +++     A L SA+A+  Q+ ++  R +  + 
Sbjct: 65  VRPQVNGIILKRLFKEGGDVKEGQQLYQIDPSVYEATLKSAQASLTQSKSISDRYKQLVD 124

Query: 123 VQAVSQAQIDADVNDLKAKRAQVEQQAAVVAKKSIRAPFAGRLGITALNPGQYVNAG--D 180
            QAVS+ + D  V +     A V+     V    + AP +GR+G +++  G  V+ G  D
Sbjct: 125 EQAVSRQEYDTAVANRMTSEANVQTAQINVRYTKVFAPISGRIGRSSVTEGALVSNGQAD 184

Query: 181 KLVTLQTLDPIYVDFTLPQQQL----AGLAVGQV---------VNLTVDTFPGQSFSGKI 227
            +  +Q LDPIYVD T    ++      LA GQ+         V LT++        GK+
Sbjct: 185 AMAVIQQLDPIYVDVTQSSAEMLKLRRDLASGQLEKAGDNAAKVKLTLEDGSAYGVDGKL 244

Query: 228 NAISPKVDAATRNVQVEATISNPKQVLLPGMFANVKIDIGGSQERLTLPSTAVTYNPYGS 287
                 VD  T +V + A   NP   LLPGMF + ++  G + + +  P   VT +  G+
Sbjct: 245 EFSEVSVDQTTGSVTLRAVFPNPDHTLLPGMFVHAQLQAGVNSKAILAPQQGVTRDLKGT 304

Query: 288 TVYVVKQAEPPKAGAPGTPGTPAPAPATDASGKPQLVAQQVFVETGPTRGDQISIVKGLE 347
              +V  A+                   +   + +LVA +       T G    + KGL 
Sbjct: 305 PTALVVNAD-------------------NKVEQRELVANR-------TYGAYWLVEKGLN 338

Query: 348 AGQVVVSSGQNKLKNGTPVTVD--NSVKPTN 376
           AG  V++ G   +K G  V V   ++ KP +
Sbjct: 339 AGDRVITEGLQYVKPGAEVKVKAADNAKPAD 369