Pairwise Alignments

Query, 385 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

 Score =  111 bits (278), Expect = 3e-29
 Identities = 99/369 (26%), Positives = 160/369 (43%), Gaps = 51/369 (13%)

Query: 32  PQTVSTVEVQKLQWQSQFTAVGTLNPVRGADLSTEVAGLVRNVHFKSGQDVKAGALLVEL 91
           P  V  V V+   +   + A+GT+      ++ + VAG +  +HFK GQ VKAG LL E+
Sbjct: 64  PVPVRVVPVRIGDFPLYYKALGTVTATNTVNVRSRVAGELVKIHFKEGQRVKAGDLLAEI 123

Query: 92  NADSDIALLHSAEAAAAQAATVLKRDQAQLA--------------VQAVSQAQIDADVND 137
           +       L  AE   AQ    LK  Q  LA                  ++AQ+      
Sbjct: 124 DPRPYRIALQQAEGTLAQNQAQLKNAQVDLARYKGLYAEDSIAKQTLDTAEAQVAQFQGL 183

Query: 138 LKAKRAQVEQQAAVVAKKSIRAPFAGRLGITALNPGQYVNAGD--KLVTLQTLDPIYVDF 195
           +K  +AQV      +    IRAP +GR+G+  L+ G  V A D   LV +   +PI V F
Sbjct: 184 VKTNQAQVNDARLNLDFTQIRAPISGRVGLRQLDLGNLVAANDTTALVVITQTEPINVAF 243

Query: 196 TLPQQQLAGL--AVGQVVNLTVDTFP-GQS---FSGKINAISPKVDAATRNVQVEATISN 249
           TLP+ +L+ +        +L V+ +  G S    +G + +I  ++D  T  ++ +    N
Sbjct: 244 TLPETELSTVLERYRSGASLPVEAWDRGDSKLQSTGVLGSIDNQIDTTTGTLKFKGRFEN 303

Query: 250 PKQVLLPGMFANVKIDIGGSQERLTLPSTAVTYNPYGSTVYVVKQAEPPKAGAPGTPGTP 309
               L P  F NV++     ++ +  P+ A+ +   G+  YVV +               
Sbjct: 304 KDLALFPNQFVNVRLLADTLKQVVMAPAAAIQFGNDGTFAYVVNE--------------- 348

Query: 310 APAPATDASGKPQLVAQQVFVETGPTRGDQISIVKGLEAGQVVVSSGQNKLKNGTPVTV- 368
                       Q       ++ G + G+   I+ GL+AG  +V  G ++L+ GT V V 
Sbjct: 349 ------------QSTVNVRKLKVGASDGENSVILDGLKAGDRLVLEGTDRLREGTKVEVV 396

Query: 369 -DNSVKPTN 376
            D+S  PT+
Sbjct: 397 EDSSQVPTS 405