Pairwise Alignments

Query, 385 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

 Score =  259 bits (662), Expect = 9e-74
 Identities = 155/380 (40%), Positives = 226/380 (59%), Gaps = 20/380 (5%)

Query: 1   MIGCVLLLVAAL----ALGKFLQIRALIAAVPKPGPQTVSTVEVQKLQWQSQFTAVGTLN 56
           M+  VLL+V AL    A   + QI+   A  PKP P TV+    ++  WQ +  AVG+L 
Sbjct: 30  MLAVVLLIVLALGGYKAFSIYQQIQMFTA--PKP-PITVAAAMAEQRPWQERLPAVGSLK 86

Query: 57  PVRGADLSTEVAGLVRNVHFKSGQDVKAGALLVELNADSDIALLHSAEAAAAQAATVLKR 116
            ++G DLS EV G+V+++HF SGQ VKAG LL++LN D + ALL +A A    A     R
Sbjct: 87  ALQGVDLSLEVEGIVKSLHFDSGQQVKAGQLLLQLNDDQETALLGTALADLGLAKVDFGR 146

Query: 117 DQAQLAVQAVSQAQIDADVNDLKAKRAQVEQQAAVVAKKSIRAPFAGRLGITALNPGQYV 176
               +   A+S+ + D   +  +  +A VEQ  A   KK I APF+G +GI  ++ GQY+
Sbjct: 147 GSQLVGDSAISRGEFDRLSSQYRRNQAVVEQLKAQKIKKRINAPFSGTIGIRQVDIGQYL 206

Query: 177 NAGDKLVTLQTLDPIYVDFTLPQQQLAGLAVGQVVNLTVDTFPGQSFSGKINAISPKVDA 236
            AG  + TLQ    +YVDF +P+Q L  L++GQ V + V  +PGQ F G ++AI+PKV+ 
Sbjct: 207 AAGTVIATLQDTSSLYVDFNVPEQALPHLSLGQQVLVQVAAYPGQRFPGSLSAINPKVEE 266

Query: 237 ATRNVQVEATISNPKQVLLPGMFANVKIDIGGSQERLTLPSTAVTYNPYGSTVYVVKQAE 296
            TRN+ V AT++NP   LLPGMFA++ I +   Q ++ +P +A+TY  YG++VYV     
Sbjct: 267 TTRNLLVRATMANPDGKLLPGMFASLLILLPNPQPQVVVPESAITYTLYGNSVYVAS--- 323

Query: 297 PPKAGAPGTPGTPAPAPATDASGKPQLVAQQVFVETGPTRGDQISIVKGLEAGQVVVSSG 356
            P+    G        P  D  G+PQLVA+Q  V+TG  R   + + +GL+AG+ VV++G
Sbjct: 324 -PRKDKDG-------KPVYDDKGQPQLVAEQRTVKTGERRDGVVVVSEGLQAGEQVVTAG 375

Query: 357 QNKLKNGTPVTV--DNSVKP 374
           Q KL  G  + +  DN++KP
Sbjct: 376 QLKLTPGAAIRIGQDNALKP 395