Pairwise Alignments

Query, 519 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 548 a.a., AMP-binding domain protein from Pseudomonas putida KT2440

 Score =  262 bits (670), Expect = 2e-74
 Identities = 188/523 (35%), Positives = 256/523 (48%), Gaps = 23/523 (4%)

Query: 7   LHRSVQQHPDKVAVRFAGRTRSFRDYADRVARLAGALRRLGMQPGDRVAMLALNSDRYLE 66
           L R+ Q +P + AV +  R  S+R   +R   LA AL R+G+QPG+RVA+LA N    LE
Sbjct: 26  LKRAAQVYPQRDAVIYGARRYSYRQLHERSRALASALERVGVQPGERVAILAPNIPEMLE 85

Query: 67  YQMAVPWGGGVLNPCNIRWSAAEILYSLEDSGSTILLVDENFRALVEQMRGQATSLREVI 126
               VP  G VL   NIR     I + L    + +L+ D  F A+  Q      +   ++
Sbjct: 86  AHYGVPGAGAVLVCINIRLEGRSIAFILRHCAAKVLICDREFGAVANQALAMLDAPPLLV 145

Query: 127 YCGDGALP----AGMHGYEALI---DAAAPVPDTARRDEDLAGIFYTGGTTGFPKGVMLS 179
              D        A    YEA +   D A P+       + +A I YT GTTG PKGV+L 
Sbjct: 146 GIDDDQAERADLAHDLDYEAFLAQGDPARPLSAPQNEWQSIA-INYTSGTTGDPKGVVLH 204

Query: 180 HTNICSSGFAALGEGLAPPDSSYLHAAPMFHLADMGLATPHWFQGSTHVIVPSFSPEAVL 239
           H     +  A        P S YL   PMFH             G THV +    P+A+ 
Sbjct: 205 HRGAYLNACAGALIFQLGPRSVYLWTLPMFHCNGWSHTWAVTLSGGTHVCLRKVQPDAIN 264

Query: 240 NAIAADRVTHALLVPTMIQMLVDHPSMREPRDLRSLRCITYGASPISEAVLNRAMEAFPG 299
            AIA   VTH    P ++ ML+       P    S+  IT GA+P S  +   AMEA  G
Sbjct: 265 AAIAEHAVTHLSAAPVVMSMLIHAEHASAPPVPVSV--ITGGAAPPSAVIA--AMEA-RG 319

Query: 300 VEFAQAYGMTELSPIATI---NPPSNHTA-EGRKRGKLRSAGRASYCMEVRIVDAD-GAE 354
                AYGMTE    +T+    P  +    E R +   R         E  ++D D G  
Sbjct: 320 FNITHAYGMTESYGPSTLCLWQPGVDELPLEARAQFMSRQGVAHPLLEEATVLDTDTGRP 379

Query: 355 VPRG--TVGEVAVRGPNVMQGYWNKPEQTAAAVRDGWMHTGDGAYMDDDGYIFVVDRLKD 412
           VP    T+GE+ VRG  VM+GY + PE T AA+ +GW+HTGD A +  DGY+ + DR KD
Sbjct: 380 VPADGLTLGELVVRGNTVMKGYLHNPEATRAALANGWLHTGDLAVLHLDGYVEIKDRAKD 439

Query: 413 MIISGGENVYSAEVENAINQHPAVAACAVIGIPSDEWGEAVHAALVLKPGQGIRPEELIA 472
           +IISGGEN+ S E+E  + QHP V   AV+  P   WGE  HA + L+       ++L+ 
Sbjct: 440 IIISGGENISSLEIEEVLYQHPEVVEAAVVARPDSRWGETPHAFVTLRADALASGDDLVR 499

Query: 473 HCKTLIASYKCPRSVAVLDALPLSGAGKVLKTKLREPFWQGRQ 515
            C+  +A +K PR V+++D LP +  GK+ K  LRE  W  +Q
Sbjct: 500 WCRERLAHFKAPRHVSLVD-LPKTATGKIQKFVLRE--WARQQ 539