Pairwise Alignments

Query, 536 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

Subject, 515 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  221 bits (564), Expect = 4e-62
 Identities = 147/487 (30%), Positives = 241/487 (49%), Gaps = 27/487 (5%)

Query: 34  LGTALLLSACAVGPDFKTPELPAAAQAPDYTPAPMPSRTVQAEGPAGQAQELVAGRDIPA 93
           +G ALLLSACA+GPD++ PE+   AQ  +           Q    A  +  L  G     
Sbjct: 47  MGLALLLSACAIGPDYQRPEVVEPAQFKE----------AQGWRQATPSDSLARGA---- 92

Query: 94  QWWDVFRSEPLDQLIRASLAQSPTLASAQAALRQAEATYEAKTGNLWPQVSAQLGVQRER 153
            WW+++    L+ L+      + T+A A+A  RQA+A   +  G  +P V   +G  R  
Sbjct: 93  -WWELYGDRQLNDLVMRLNTANQTVAQAEARFRQAQALARSSRGAFYPTVDLSVGKTRAS 151

Query: 154 ----ASEISTQVPGGQLLTLYNASVNVSYNLDVFGGTRRQIEGAQAAVDTQRYQVEAVYL 209
               +S  S       +    NA + VS+  D++G  RR +E  +A+ +     + A+ L
Sbjct: 152 QGTGSSNASLSSSSSGIRDTLNAQLGVSWEADIWGKLRRGLEANEASAEASSADLAAMRL 211

Query: 210 TLTSNLVTTAIREASLRAQLQATREVLQAQTEQLNVIEKQFDTGAIPKSIVLQQRTQVAQ 269
           +  S LV + ++   +  Q +  +  L+     L + E Q+  G   K  V Q +TQ+  
Sbjct: 212 SQQSELVQSYLQLRVMDEQTRLLQATLETYQRSLQMTENQYRAGVSGKDAVAQAQTQLKT 271

Query: 270 TQATLPPIEKALAQTRHQLAVFAGRLPSEAGLP-EFDLASLSLPQALPLSLPSELARQRP 328
           TQA+L  +    AQ  + +AV  G  P+   L    D+ +L  PQ +P+SLPS+L  +RP
Sbjct: 272 TQASLIDLIWQRAQLENAIAVLIGEAPANFNLAVSKDIPAL--PQ-IPVSLPSQLLERRP 328

Query: 329 DVRASEAQLHQASAAVGVATANLYPQIQLSASYGNNALRARDLFTGPTTLWNIGAGLTQP 388
           D+ ++E  +  A+A +GVA A  YP + LS + G ++    D  + P   W++G  L   
Sbjct: 329 DIASAERSVIAANANIGVAKAAYYPDLSLSLAGGYSSSTYADWISLPNRFWSVGPKLAMT 388

Query: 389 IFNGGALRAQQRAAVAAYDSAAAQYRNTVLGAFQNVADALRALEL--DAIALQNQAAAES 446
           +F+GG   A+    VA+YD   A+YR TVL  F+ V + +  L++  D   + N+A    
Sbjct: 389 LFDGGQRSAEVDRTVASYDETVAKYRQTVLDGFREVENYMVQLKVLEDEAVVSNEAL--E 446

Query: 447 LARQSLDLSTAQFRAGAVSYVTLLTAQQAWLQTHTALVQAQAARYADTAALFQALGGGWW 506
            AR+SL L+  Q++AG ++Y+ ++T Q   L     ++     R   +  L  ALGGGW 
Sbjct: 447 AARESLRLTQNQYKAGLIAYLDVVTVQATALSNERTVLTLLQTRLVASVQLIAALGGGWD 506

Query: 507 NRAELAN 513
            +  +A+
Sbjct: 507 GQTPIAD 513