Pairwise Alignments

Query, 536 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

Subject, 481 a.a., RND transporter from Pseudomonas simiae WCS417

 Score =  203 bits (517), Expect = 1e-56
 Identities = 141/474 (29%), Positives = 219/474 (46%), Gaps = 25/474 (5%)

Query: 40  LSACAVGPDFKTPELPAAAQAPDYTPAPMPSRTVQAEGPAGQAQELVAGRDIPAQWWDVF 99
           LSAC VGPDF+ P+ P   Q               +E    QA        +  +WWDVF
Sbjct: 14  LSACTVGPDFQRPQGPQVTQ--------------WSEPQGRQAASRAVNDPLQERWWDVF 59

Query: 100 RSEPLDQLIRASLAQSPTLASAQAALRQAEATYEAKTGNLWPQVSAQLGVQRERASEIST 159
             E L  L R +L  +  L  A + L+Q+ A  +  T   +P V+A    QR+R S    
Sbjct: 60  HDEQLSALTRRALTDNLDLKLASSRLQQSRAVRQVTTAERYPNVNANGDYQRKRNSGKGL 119

Query: 160 QVPGGQ----LLTLYNASVNVSYNLDVFGGTRRQIEGAQAAVDTQRYQVEAVYLTLTSNL 215
             P G         ++   + S+ LD +G  +R+ E A A +        AV L++ +  
Sbjct: 120 SDPSGNNGRSAFNQWDMGFSASWELDFWGRVKRETEAADATLQVAENDRRAVLLSVLAET 179

Query: 216 VTTAIREASLRAQLQATREVLQAQTEQLNVIEKQFDTGAIPKSIVLQQRTQVAQTQATLP 275
               I+   ++     T + L      L + + +   G      V +   QVA  +A LP
Sbjct: 180 AQNYIQLRGVQNTRAVTEQNLDVARHSLKLSQLRLADGVATDLDVAEAAAQVAAIEARLP 239

Query: 276 PIEKALAQTRHQLAVFAGRLPS--EAGLPEFDLASLSLPQALPLSLPSELARQRPDVRAS 333
            +++   Q  + L++  G  P    A L + D A     + + + LPSELA +RPD+R +
Sbjct: 240 DLQQRQDQLINALSLLMGEPPQALHAQLSK-DAAVPQTQRQVAIGLPSELAERRPDIRQA 298

Query: 334 EAQLHQASAAVGVATANLYPQIQLSASYGNNALRARDLFTGPTTLWNIGAGLTQPIFNGG 393
           EA+LH A+A++GVA  + YP+I LS S G+ A++  D  +  +  +  G   + P+FNGG
Sbjct: 299 EARLHAATASIGVAKGDFYPRITLSGSLGSQAMQLSDFGSWGSRAFAFGPQFSLPLFNGG 358

Query: 394 ALRAQQRAAVAAYDSAAAQYRNTVLGAFQNVADALRALELDAIALQNQAAAESLARQSLD 453
            L+       A    AA  Y+ TVL A+  + D L     +A  L+  + AE++ +  + 
Sbjct: 359 RLQGMLNLREAQQQEAALAYQQTVLRAWHEIDDQL--TRYNASQLRRDSLAEAVRQNQIA 416

Query: 454 LSTA--QFRAGAVSYVTLLTAQQAWLQTHTALVQAQAARYADTAALFQALGGGW 505
           L TA  Q+  G V +V +LT Q A L T    V +          L++ALGGGW
Sbjct: 417 LRTAQQQYVEGVVDFVNVLTVQSALLATQEQWVDSSTGVSLAMVGLYKALGGGW 470