Pairwise Alignments

Query, 536 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

Subject, 496 a.a., RND efflux transporter, outer membrane protein from Pseudomonas putida KT2440

 Score =  198 bits (503), Expect = 4e-55
 Identities = 137/480 (28%), Positives = 223/480 (46%), Gaps = 23/480 (4%)

Query: 33  VLGTAL---LLSACAVGPDFKTPELPAAAQAPDYTPAPMPSRTVQAEGPAGQAQELVAGR 89
           +LG  L   LLSAC + PD+  PEL + A               Q +   G  Q   +  
Sbjct: 23  LLGAGLCVALLSACTLSPDYHRPELNSTA--------------AQFKHAEGWTQASPSDA 68

Query: 90  DIPAQWWDVFRSEPLDQLIRASLAQSPTLASAQAALRQAEATYEAKTGNLWPQV----SA 145
                WW+++    L+ L+      + T+A ++A  RQA+A   +    L+P +    S 
Sbjct: 69  IARGAWWEIYGDAGLNALVEELNRSNQTVAQSEAQYRQAQALVRSSRAALFPSLDLSTSK 128

Query: 146 QLGVQRERASEISTQVPGGQLLTLYNASVNVSYNLDVFGGTRRQIEGAQAAVDTQRYQVE 205
               Q   +S  S       +   YNA + VS+ +D++G  R  +   +A+ +     + 
Sbjct: 129 NRSAQGTGSSSSSLSNNSSGIRNTYNAQLGVSWEIDLWGKLRETLNANEASAEASFADLA 188

Query: 206 AVYLTLTSNLVTTAIREASLRAQLQATREVLQAQTEQLNVIEKQFDTGAIPKSIVLQQRT 265
           ++ L+  S LV   ++   +  Q +     + A    L + E Q+  G      V Q RT
Sbjct: 189 SIRLSQQSELVQNYLQLRVIDEQKRLLEATVAAYERSLRMNENQYRAGVAGPDAVAQART 248

Query: 266 QVAQTQATLPPIEKALAQTRHQLAVFAGRLPSEAGLPEFDLASLSLPQALPLSLPSELAR 325
           Q+  TQA L  +    AQ  + +AV  G+ P++  L +   A  +LPQ +P+SLPS+L  
Sbjct: 249 QLKSTQADLIDLIWQRAQFENAIAVLLGKAPADFALAD-SKAIPALPQ-IPVSLPSQLLE 306

Query: 326 QRPDVRASEAQLHQASAAVGVATANLYPQIQLSASYGNNALRARDLFTGPTTLWNIGAGL 385
           +RPD+ A+E  +  A+A +GV+ A  +P + LS S G ++    +    P   W++G  L
Sbjct: 307 RRPDIAAAERNVMAANANIGVSRAAYFPDLSLSMSGGYSSSSFSNWIELPNRYWSVGPQL 366

Query: 386 TQPIFNGGALRAQQRAAVAAYDSAAAQYRNTVLGAFQNVADALRALELDAIALQNQAAAE 445
              +F+ G   A+    VA YD   AQYR TVL  F+ V + L  L++       +  A 
Sbjct: 367 ALTLFDAGKRSAEVDRTVAVYDQTVAQYRQTVLDGFREVENLLVQLKVYGDEAVVRQEAL 426

Query: 446 SLARQSLDLSTAQFRAGAVSYVTLLTAQQAWLQTHTALVQAQAARYADTAALFQALGGGW 505
             AR+SL L+  Q+RAG + Y+ ++  Q   L    +++     R   +  L  ALGGGW
Sbjct: 427 DAARESLRLTENQYRAGLIGYLDVVNVQTTALSNERSVLNLLQGRLVASVQLVAALGGGW 486