Pairwise Alignments

Query, 536 a.a., Efflux transport system, outer membrane factor (OMF) lipoprotein from Variovorax sp. SCN45

Subject, 484 a.a., Probable efflux pump outer membrane protein TtgC from Pseudomonas putida KT2440

 Score =  185 bits (470), Expect = 3e-51
 Identities = 140/489 (28%), Positives = 220/489 (44%), Gaps = 20/489 (4%)

Query: 36  TALLLSACAVGPDFKTPELPAAAQAPDYTPAPMPSRTVQAEGPAGQAQELVAGRDIPAQW 95
           TA +L  C++ PD++TPE P AAQ P     P  S T  A+  A +             W
Sbjct: 11  TAFILGGCSLIPDYQTPEAPVAAQWPQ---GPAYSPTQSADVAAAEQG-----------W 56

Query: 96  WDVFRSEPLDQLIRASLAQSPTLASAQAALRQAEATYEAKTGNLWPQVSAQLGVQRERAS 155
              F    L QLI+ SL  +  L  A   L    A Y  +  +L+P VSA     R+R  
Sbjct: 57  RQFFHDPALQQLIQTSLVNNRDLRVAALNLDAYRAQYRIQRADLFPAVSATGSGSRQRVP 116

Query: 156 EISTQVPGGQLLTLYNASVNVS-YNLDVFGGTRRQIEGAQAAVDTQRYQVEAVYLTLTSN 214
              +Q     + + Y+A++ VS Y LD+FG  R   E A     +      +  + L ++
Sbjct: 117 ANMSQTGESGITSQYSATLGVSAYELDLFGRVRSLTEQALETYLSSEQARRSTQIALVAS 176

Query: 215 LVTTAIREASLRAQLQATREVLQAQTEQLNVIEKQFDTGAIPKSIVLQQRTQVAQTQATL 274
           +        + +A  + T E L+   E  N+  +  + G      V Q RT V   +   
Sbjct: 177 VANAYYTWQADQALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGARVKY 236

Query: 275 PPIEKALAQTRHQLAVFAGR-LPSEAGLP-EFDLASLSLPQALPLSLPSELARQRPDVRA 332
              ++ +AQ  + L V  G  +P++   P E D   L+    +P  LPS++ ++RPD++ 
Sbjct: 237 SQYQRLVAQDVNSLTVLLGTGIPADLAKPLELDADQLA---EVPAGLPSDILQRRPDIQE 293

Query: 333 SEAQLHQASAAVGVATANLYPQIQLSASYGNNALRARDLFTGPTTLWNIGAGLTQPIFNG 392
           +E  L  A+A +G A A  +P I L+A+ G+ +     LF+G    W     +  PIFN 
Sbjct: 294 AEHLLKAANANIGAARAAFFPSISLTANAGSLSPDMGHLFSGGQGTWLFQPQINLPIFNA 353

Query: 393 GALRAQQRAAVAAYDSAAAQYRNTVLGAFQNVADALRALELDAIALQNQAAAESLARQSL 452
           G+L+A    +    D   A+Y  T+  AFQ V+D L A +     LQ Q       +   
Sbjct: 354 GSLKASLDYSKIQKDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQRDLVQANQDYY 413

Query: 453 DLSTAQFRAGAVSYVTLLTAQQAWLQTHTALVQAQAARYADTAALFQALGGGWWNRAELA 512
            L+  ++R G  S +T L AQ+       AL+  + ++      L++ALGGGW+ +   A
Sbjct: 414 RLAERRYRIGIDSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALGGGWYEQTGQA 473

Query: 513 NATLSPTVP 521
           N   S   P
Sbjct: 474 NQQASVETP 482