Pairwise Alignments

Query, 1261 a.a., ATP-dependent helicase HrpA from Variovorax sp. SCN45

Subject, 1343 a.a., ATP-dependent RNA helicase HrpA from Rhodanobacter sp000427505 FW510-R12

 Score =  929 bits (2402), Expect = 0.0
 Identities = 561/1325 (42%), Positives = 760/1325 (57%), Gaps = 145/1325 (10%)

Query: 4    ISAHQVVIVCGETGSGKTTQLPKIALALGRGKLNAEPGKGRLIGHTQPRRIAASSVAKRI 63
            I  HQVV++ GETGSGKTTQLPK+ LA GRG+         +IG TQPRR+AA SVA+R+
Sbjct: 94   IREHQVVVIAGETGSGKTTQLPKLCLAAGRGEAG-------MIGCTQPRRLAARSVARRV 146

Query: 64   AEELKTPLGDVVGFKVRFQDRLSRDASVKLMTDGILLAETQTDPLLKAYDTLIIDEAHER 123
            AEEL TPLG+VVGF+VRF D++S  + +K MTDGILLAETQ DP L AYDTLIIDEAHER
Sbjct: 147  AEELGTPLGEVVGFQVRFNDQVSERSLIKFMTDGILLAETQGDPWLSAYDTLIIDEAHER 206

Query: 124  SLNIDFLLGYLREILPRRPDLKVIVTSATIDADRFAQHFASAKGPAPTIMVSGRTFPVEQ 183
            SLNIDFLLGYL+ +  +RP+LK+IVTSATID  RFA+HF  A    P + V GR +PVE 
Sbjct: 207  SLNIDFLLGYLKRLAIKRPELKIIVTSATIDTARFAEHFDGA----PVVEVEGRAYPVET 262

Query: 184  RYRP------FEESR---EHDLNDA--IADAVDELWR-DPHNAGDILIFLPGEREIREAA 231
            R+RP      F +++   +H    A  IA  +DE+ R DP   GD+L+FLPGEREIR+A 
Sbjct: 263  RWRPVGGQSHFSQAKSDSDHRQGSAEHIAAVLDEITRGDPR--GDVLVFLPGEREIRDAH 320

Query: 232  DHLRRHVSHQPLFRSAEVLPLFARLSGPEQDRIFESHNGRRIVLATNVAETSLTVPGIRY 291
              L R       +R  E++PL+ARLS  EQDR+F+    RR+VLATNVAETSLTVP IRY
Sbjct: 321  LLLSRRQ-----YRETEIMPLYARLSAGEQDRVFKPGVKRRVVLATNVAETSLTVPRIRY 375

Query: 292  VIDTGTARVKRYSFRSKVEQLLVEPISQAAANQRAGRCGRVANGICIRLYDEKDFEGRPR 351
            VIDTGTARVKRYS RS++E+L VEPISQAAA+QR GRCGRV  GIC RLYDE DF GR  
Sbjct: 376  VIDTGTARVKRYSQRSQLERLHVEPISQAAADQRKGRCGRVGPGICYRLYDEADFAGRAA 435

Query: 352  FTDPEILRSSLAGVILRMKSLRLGDVARFPFLEAPSPRAIADGYQLLNELGAVDDANELT 411
            FTDPE+LRSSLA VILRM +L+LG+V  FPFLEAP PR +ADG++ L E+ A+D+  +LT
Sbjct: 436  FTDPELLRSSLANVILRMLALKLGEVDEFPFLEAPDPRVVADGFRRLTEISAIDEGRKLT 495

Query: 412  HTGAELSRLPLDPRVGRMILEARARGALEEVLIIASALSVQDVRDRPMDAQQQADQAHSK 471
              G  L++LP+D ++ RM++E     AL E+L+I + LS+QD R+RP DA+QQAD AH+ 
Sbjct: 496  AIGRTLAKLPIDVQLARMLVEGEQLHALRELLVIVAFLSIQDPRERPADARQQADAAHAA 555

Query: 472  FDDEKSEFSGYLRLWKWIADARGGHGDTHKLSNRQYEQLLRQNFINIRRVREWRDIHSQL 531
            F D KS+F+G L LW+   DA        +L+  +      ++F++  R+REWR++H QL
Sbjct: 556  FADPKSDFAGVLNLWRAYHDAH------EELTQSKLRDWCSRHFLSFMRMREWRELHRQL 609

Query: 532  LTVVTEHKWRINAEPAG------------------------------------------- 548
            L VV E  W+++ +P                                             
Sbjct: 610  LLVVGELGWKLDGQPQAARPAPPPARRGRLGGGEAFKIKSTPPQPSPASRGGSESVDADR 669

Query: 549  -YEPLHLSMLAGLLGNVGWKLEDDEAYLGARGIKFYKHPGAHLKKKPGRWIVAAELVET- 606
             YE +H ++LAGL   VG K ++   Y   R  KF   PG+ L K P  W+  A++++  
Sbjct: 670  LYESVHRALLAGLPTQVGRK-DEKGVYQSTRERKFQLFPGSALAKAPPNWVFCAQILDVG 728

Query: 607  TRLFGRGVANIEPQWLEQVAGHLLKKQLLDPHWEKKGAQVSALERATLYGLVVYSGRRVD 666
             R++G   A +EP W+EQ A HLL+    DPHW KK   V A E+ +L+GLV+   R V 
Sbjct: 729  GRVWGMMNARVEPLWIEQQAAHLLRTHCRDPHWSKKRGCVVAYEQVSLFGLVLVEKRPVT 788

Query: 667  FTKVDPVAAREIFIREALVGGQWESKFPFLTANRKLVREVEGLEHKSRRQDVLVDDELIF 726
            F + DP  A  IF+REALV G  ++K  F+ AN++++ E +G+E K RR+ ++  ++ + 
Sbjct: 789  FQRQDPALAHAIFLREALVRGDIDTKVDFVRANQRVLEEAQGIEAKQRREGLIRHEDELV 848

Query: 727  VFYDAQLPADVASGITFENWYRHASREQPRLLYLTRDELMRHQAAGITTQSFPPTLRLGG 786
             F++ +LP ++AS    + WYR A   +   L  + D++M    AG+  ++FP  L +G 
Sbjct: 849  AFFEGKLPEEIASSRALDVWYRKARPAEQAALRWSLDDVMA-GGAGLDARAFPAALEIGA 907

Query: 787  VDCAASYLHEPGDAKDGLTVSVPLFVLNQVSEERCEWLVTGMLKDKIQALLKSLPQRPRS 846
                  Y   PGD  DG+T+ +PL +LN +   RCEWLV G+L DK+  L++ LP+  R 
Sbjct: 908  QRYRLEYRFVPGDEADGVTLQLPLAMLNALRLARCEWLVPGLLADKVAELIRGLPKALRR 967

Query: 847  RLVPLPESAGKLAEELSVPELFGTGSLTDVLLKRVRDMTSIDVKRADFKLDMLPPHLFMN 906
              VP P+ A    E     E     SL   L   ++  T +++   DF    LPPHL M 
Sbjct: 968  NFVPAPDFARAFVE----AEAPRDESLVKALAAFLQRATGVELAAGDFTAVELPPHLLMR 1023

Query: 907  LRVIDEHGRQLGMGRNLGALKAELGAQARGAFQALAGLNVKASPEKKDAASSDQGSKTPA 966
             R+ DE GR L  GR+L AL+ +    AR AF     L +     ++D A          
Sbjct: 1024 YRLHDERGRTLASGRDLAALRGQWEGPAREAFSRKTDLEL----TREDVA---------- 1069

Query: 967  KASSAPAPAALPAGQRYTSWTFGELPELMEVRRGSQSLIGFPALRDEGDAVTIEVFDEPA 1026
                              SW F E+P  +   R    L  FPAL D G+ V + VF+   
Sbjct: 1070 ------------------SWDFEEIPAQL---RSEGGLTAFPALVDLGETVALRVFERSD 1108

Query: 1027 VAAAKHRAGLRRLFALQLKDALKYLEKNIPDLQKMSVAYMPLGTSEELRTQIIDVAIDRA 1086
             A   HR G+ RL    L    K   + +P    +++ Y PLG  E LR  +++      
Sbjct: 1109 EARVAHRQGVVRLLRNALASEAKQARRRLPIGHALALKYAPLGGVEGLREDLLEGGFADL 1168

Query: 1087 FLQEPLPT-DEFAFKKRLDEGRGRLTLIANEVARLASTILIEYAAAARKIKDTK--IQPD 1143
              +  L      AF+    +    L     E  +LA  I+   A       D K  +QP 
Sbjct: 1169 LQRHELDVRTAGAFESLRTQCARELFGAGVERLKLAEPIIEAQA-------DLKPWLQPP 1221

Query: 1144 AV-------QDAAQQLQRLVGKRFIADAPWTQLQHFARYLKAIVLRLDKLRADPARDAAK 1196
             +        D  +Q   L+   F+ + P  +L H+ RYLKA+ LR ++LR DPA+D  +
Sbjct: 1222 LLGFARASHDDLREQFDALLVPGFLRELPPARLAHYPRYLKAMRLRGERLRQDPAKDQQR 1281

Query: 1197 LAELKPQDQRYWRLVAERKGVVDD--RMLEFRWLLEELRVSFFAQELRTPQPVSVKRLDK 1254
            L ++ P    YWR   + +    D   + E RWL+EE RVS FAQEL+T +PVS KRL K
Sbjct: 1282 LLQVLP----YWRAYLQHRAAGADPAGLDELRWLIEEWRVSLFAQELKTAEPVSAKRLAK 1337

Query: 1255 AWAQL 1259
            A A L
Sbjct: 1338 ALAAL 1342