Pairwise Alignments

Query, 1261 a.a., ATP-dependent helicase HrpA from Variovorax sp. SCN45

Subject, 1301 a.a., ATP-dependent helicase HrpA from Pseudomonas putida KT2440

 Score = 1003 bits (2593), Expect = 0.0
 Identities = 564/1280 (44%), Positives = 790/1280 (61%), Gaps = 83/1280 (6%)

Query: 3    AISAHQVVIVCGETGSGKTTQLPKIALALGRGKLNAEPGKGRLIGHTQPRRIAASSVAKR 62
            A++ +QV+++ GETGSGKTTQLPKI L LGRG          LI HTQPRRIAA SVA R
Sbjct: 82   ALAENQVLVIAGETGSGKTTQLPKICLELGRGSHG-------LIAHTQPRRIAARSVAAR 134

Query: 63   IAEELKTPLGDVVGFKVRFQDRLSRDASVKLMTDGILLAETQTDPLLKAYDTLIIDEAHE 122
            +AEEL TPLG +VG++VRF+D+   +  VKLMTDGILLAETQ D  L+ YDT+I+DEAHE
Sbjct: 135  VAEELGTPLGALVGYQVRFEDQSDSNTLVKLMTDGILLAETQHDRFLERYDTIIVDEAHE 194

Query: 123  RSLNIDFLLGYLREILPRRPDLKVIVTSATIDADRFAQHFASAKGPAPTIMVSGRTFPVE 182
            RSLNIDFLLGYL+ +L RRPDLK+I+TSATID +RF++HF  A    P I VSGRTFPV+
Sbjct: 195  RSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSRHFDGA----PIIEVSGRTFPVD 250

Query: 183  QRYRPFEESREHDLND---------AIADAVDELWRDPHNAG----DILIFLPGEREIRE 229
              YRP    ++ + N          AI   +DEL +   + G    D+LIFLPGEREIR+
Sbjct: 251  TWYRPLTSEQDEEGNQIEDDLTVDQAILATLDELAQHERSEGKGPGDVLIFLPGEREIRD 310

Query: 230  AADHLRRHVSHQPLFRSAEVLPLFARLSGPEQDRIFESHNGRRIVLATNVAETSLTVPGI 289
            AA+ LR+        R  E+LPL+ARLS  EQ RIF+ H GRR+VLATNVAETSLTVPGI
Sbjct: 311  AAEILRK-----AQLRHTEILPLYARLSPAEQQRIFQPHTGRRVVLATNVAETSLTVPGI 365

Query: 290  RYVIDTGTARVKRYSFRSKVEQLLVEPISQAAANQRAGRCGRVANGICIRLYDEKDFEGR 349
            RYVIDTGTAR+ RYS+R+KV++L +E +SQA+ANQR GRCGRV  GIC+RLY E+DF  R
Sbjct: 366  RYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYSEEDFNSR 425

Query: 350  PRFTDPEILRSSLAGVILRMKSLRLGDVARFPFLEAPSPRAIADGYQLLNELGAVDDANE 409
            P FTDPEILR++LA VIL+M  LRLG +  FPF+E P  +AI+DG+ LL EL AV+  N+
Sbjct: 426  PAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAVNRENQ 485

Query: 410  LTHTGAELSRLPLDPRVGRMILEARARGALEEVLIIASALSVQDVRDRPMDAQQQADQAH 469
            LT  G +L+RLP+DPR+GRM+LE    G+L+EVLI+ SALSVQD R+RP + QQ ADQAH
Sbjct: 486  LTPIGRQLARLPIDPRLGRMLLEGARLGSLQEVLIVTSALSVQDPRERPPERQQAADQAH 545

Query: 470  SKFDDEKSEFSGYLRLWKWIADARGGHGDTHKLSNRQYEQLLRQNFINIRRVREWRDIHS 529
            +++ D  S+F+  + LW+   + R        L+        R+ F+N  R+REWRD H 
Sbjct: 546  AQWKDVDSDFAALVNLWRGFEEQR------QALTANPLRNWCRKQFLNYLRLREWRDAHR 599

Query: 530  QLLTVVTEHKWRINAEPAGYEPLHLSMLAGLLGNVGWKLEDDEAYLGARGIKFYKHPGAH 589
            QL  +  + +  +N EP  Y+ LH ++L+GLL  +G K E+ + Y GAR  +F+ HP + 
Sbjct: 600  QLALICRDLQLTVNKEPTDYQKLHKAILSGLLSQIGQKTEEGD-YQGARQRRFWVHPSSG 658

Query: 590  LKKKPGRWIVAAELVETTRLFGRGVANIEPQWLEQVAGHLLKKQLLDPHWEKKGAQVSAL 649
            L +K  +W++AAELVETT+L+ R VA IEP W+E +AGHL+KK   +PHWEKK  QV A 
Sbjct: 659  LGRKRPQWVMAAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAY 718

Query: 650  ERATLYGLVVYSGRRVDFTKVDPVAAREIFIREALVGGQWESKFPFLTANRKLVREVEGL 709
            E+ TLYGL++   R V +  +DP  +RE+FIRE LVGG+ +S+   L AN++L+ E++ L
Sbjct: 719  EQITLYGLILVGRRPVHYGPIDPATSRELFIREGLVGGEIQSRAKCLAANKRLLGELDEL 778

Query: 710  EHKSRRQDVLVDDELIFVFYDAQLPADVASGITFENWYRHASREQPRLLYLTRDELMRHQ 769
            E K+RR+D+L D+E ++ FY+A+LPA++    TF++WYR  S++   LL +  ++++  +
Sbjct: 779  EAKARRRDILADEETLYAFYEARLPAEIHQTATFDSWYRMGSQKDANLLIMREEDVLARE 838

Query: 770  AAGITTQSFPPTLRLGGVDCAASYLHEPGDAKDGLTVSVPLFVLNQVSEERCEWLVTGML 829
            A+ +T   +P ++++G +    SY  EPG  +DG+TV VP  +L  +  ER EWLV G+L
Sbjct: 839  ASEVTAAQYPDSMQVGDLRLPLSYHFEPGHPRDGVTVRVPAPLLPSLPGERLEWLVPGLL 898

Query: 830  KDKIQALLKSLPQRPRSRLVPLPESAGKLAEELSVPELFGTGSLTDVLLKRVRDMTSIDV 889
            + K  AL+++LP+  R   VP+P+        ++    FG G+L   L + +  MT   V
Sbjct: 899  EAKCVALVRNLPKALRKNFVPVPDFVKASLARMT----FGQGALPQALGQELLRMTGARV 954

Query: 890  KRA--DFKLDMLPPHLFMNLRVIDEHGRQLGMGRNLGALKAELGAQARGAFQALAGLNVK 947
                 D  ++ +  HL MN+ V+D  G+ LG GR+L  L A   A ++ A          
Sbjct: 955  SDEAWDESVNQVEGHLRMNIEVVDGQGKFLGEGRDLAELTARFAAASQAAL--------- 1005

Query: 948  ASPEKKDAASSDQGSKTPAKASSAPAPAALPAGQRYTSWTFGELPELMEVRRGSQSLIGF 1007
                   A   D   + P +A +                 F E+ +  + +    S+  +
Sbjct: 1006 -------AVPRDAKGEQPVQAKA-----------------FSEVKQTAQQKIAGLSMTVY 1041

Query: 1008 PALRDEGDAVTIEVFDEPAVAAAKHRAGLRRLFALQLKDALKYLEKNIPDLQKMSVAYMP 1067
            PAL ++   V    F   A A  +HR  L+RL   QL +  K+L   +P L ++ + Y  
Sbjct: 1042 PALVEDNGTVREGRFSTQAEAEFQHRRALQRLLLQQLAEPAKFLRGKLPGLTELGLLYRE 1101

Query: 1068 LGTSEELRTQIIDVAIDRAFLQ--EPLPTDEFAFKKRLDEGRGRLTLIANEVARLASTIL 1125
            +G  E L   I+  ++D   L+  +PLP +  A     +  RG     A  +AR    +L
Sbjct: 1102 MGRVEALVEDILLASLDSCILEGEQPLPREGAALAALAERKRGSWAEHAERLARQTLEVL 1161

Query: 1126 IEYAAAARKIKDTKI---QPDAVQDAAQQLQRLVGKRFIADAPWTQLQHFARYLKAIVLR 1182
              +    ++ K  KI   Q  A+ D  QQL  LV   F+ + P    +   RYLKA+ LR
Sbjct: 1162 KLWHGLQKRFKG-KIDLSQAVALNDIKQQLGNLVYPGFVRETPGVWFKELPRYLKAVELR 1220

Query: 1183 LDKLRADPARDAAKLAELKPQDQRYWRLVAE--RKGVVDDRMLEFRWLLEELRVSFFAQE 1240
            L+KL +   +D     EL     +Y     +  ++G  D+++  +RW LEE RVS FAQ+
Sbjct: 1221 LEKLGSQVQKDRVWSGELANLWAQYKARADKHAQEGKRDEQLTVYRWWLEEYRVSLFAQQ 1280

Query: 1241 LRTPQPVSVKRLDKAWAQLQ 1260
            L T  P+S KRL K W+Q++
Sbjct: 1281 LGTKVPISDKRLSKQWSQVE 1300