Pairwise Alignments

Query, 376 a.a., CzcABC family efflux RND transporter, membrane fusion protein from Variovorax sp. SCN45

Subject, 605 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  100 bits (248), Expect = 1e-25
 Identities = 86/336 (25%), Positives = 161/336 (47%), Gaps = 33/336 (9%)

Query: 41  VHDGVLIAVPENSPLRASLQVAAVESQQVQRPISAPGSIEAAPEKLVKVTSPVTGRIVKL 100
           V D + I++   +   A++  +AV +    + +   G ++     +   +S ++GRI +L
Sbjct: 83  VLDPMAISMSPTAMQLANITTSAVGTMDPVKTVRLNGKVQEDERLVSSQSSHISGRIERL 142

Query: 101 QRAL-GDSVKAGDPLFTLDSADLSSAFGDATKAEATLRQAQRDFARQKLLFEADITARKD 159
             +  G+ V  G  +  + S +L +A       +  L +AQ+    Q  LF++  T  K+
Sbjct: 143 NVSFTGEYVNKGQVIAYIYSPELVTA-------QEELFEAQKIKETQPQLFKSARTKLKN 195

Query: 160 YEAAELAFGAATSDAQVTKNRLAQLGAGTGGGSHRDYVLRSPISGRVIEMTGAQGGYWND 219
           ++          SD Q+ K  + + G+ +      D+ + + ISG V+      G Y   
Sbjct: 196 WKL---------SDGQIDK--ILERGSPSD-----DFPITADISGYVLNKNVIVGDYIKR 239

Query: 220 INAPVMTVADLSTVFLTASVSEKDIAALRVGQKARIDLSAYPDQAFDGTVKYIGEVLDAD 279
              PV  +A+LS V++   V E +++ +  G + R  + + P Q F+G + ++  V+D  
Sbjct: 240 -GEPVYEIANLSRVWVLFDVYESEMSWISKGDQVRFTVQSLPGQTFEGKISFLDPVIDPK 298

Query: 280 TRTVKVRVAVDNRQGRFRPGMF----AKVVFSGEAHPALTVPASALVQSGLYTKVFVEK- 334
           TR  K RV V N   + +P MF     + +   +A+  + +P +A++ +G  + V+V+  
Sbjct: 299 TRVAKARVEVRNNDNQLKPEMFVSGTVEAMLPNKAN-TVVIPKTAVMWTGKRSVVYVKNT 357

Query: 335 --GPFAFEARKVAVGPVIGDRIEILSGLQAGERIAV 368
                 F  R+V +GP +GD   + SGLQ GE IAV
Sbjct: 358 SGSGVNFIMREVMLGPGLGDSFIVESGLQEGEEIAV 393