Pairwise Alignments

Query, 1042 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1042 a.a., Multidrug resistance protein MexB from Pseudomonas putida KT2440

 Score = 1009 bits (2608), Expect = 0.0
 Identities = 536/1030 (52%), Positives = 713/1030 (69%), Gaps = 10/1030 (0%)

Query: 5    FFIHRPVFAWVIAILIMLAGGVAIRTLPVSQYPDIAPPTVVVSANYPGASAQAVENSVTQ 64
            FFI RPVFAWV+A+ I+LAG +AI  LPV+QYP++APP V + A YPGASA  ++ SV  
Sbjct: 4    FFIDRPVFAWVVALFILLAGALAIPQLPVAQYPNVAPPQVEIYAVYPGASAATMDESVVS 63

Query: 65   VLEQQLKGIDGLLYFKSTSSSAGYADISVTFRQGIDPDTAQVQVQNKVSQATSRLPQAVQ 124
            ++EQ+L G D LLYF+S  SS G A I+ TF  G  PD AQV VQN++    SRLP+ V 
Sbjct: 64   LIEQELNGADNLLYFES-QSSLGSATITATFAPGTHPDLAQVDVQNRLKVVESRLPRPVT 122

Query: 125  QQGVTVYKSQNNFLLIVALYDETDRRTDTDVADWMASNLRDPVSRVDGVGSVQAFGAAYA 184
            QQG+ V K    FLL+  L  E  +  +T ++D +A N+ D + R+ GVG  Q +G+  A
Sbjct: 123  QQGLQVEKVSTGFLLLATLTSEDGKLDETALSDILARNVMDEIRRLKGVGKAQLYGSERA 182

Query: 185  MRIWLDPHRLASYQLMPSDITAAITAQNTQVSVGEIGARPSPAGQQLNATVTALSRLQTP 244
            MRIW+DP +L  + L P+D+  AI AQN QV+ G IG  PS + Q++ A V    +L +P
Sbjct: 183  MRIWIDPRKLIGFNLTPNDVAEAIAAQNAQVAPGSIGDLPSRSTQEITANVVVKGQLSSP 242

Query: 245  EQFRGIVLKTQADGAVVRLGDVARVEIGNESYAETTRLNGHPAAGAAIMLAPGANALTTA 304
            ++F  IVL+   DG+ V +GDVARVEIG + Y   TRLNG PA   ++ L+PGANA+ TA
Sbjct: 243  DEFAAIVLRANPDGSTVTIGDVARVEIGAQEYQYGTRLNGKPATAFSVQLSPGANAMETA 302

Query: 305  KAVKARIAEMEPSLPPGLRVAYAEDTTRFVKISIQSVLKTLLEAIALVVVVMYLFLQNWR 364
              V+A++ ++    P G++     DT+ FVK+SI+ V+ TL EA+ LV  VM+LFLQN R
Sbjct: 303  TLVRAKMQDLARYFPEGVKYDIPYDTSPFVKVSIEQVINTLFEAMLLVFAVMFLFLQNLR 362

Query: 365  ATVIPAITVPVVLLGTFGVLAAFGYSINVLTLFGMVLAIGLLVDDAIVVVENVERVMHEE 424
             T+IP + VPV L+GTF V+ A G+S+NVLTLFGMVLAIG+LVDDAIVVVENVER+M EE
Sbjct: 363  YTLIPTLVVPVALMGTFAVMLAMGFSVNVLTLFGMVLAIGILVDDAIVVVENVERIMAEE 422

Query: 425  GLDAKAATIKSMKEITGALIGIALVVSAVFLPMTFFGGSVGVIYRQFSVTIIASMALSVV 484
            GL  K AT K+M +I+GA++GI LV+ AVFLPM F  GSVGVIY+QFS+++  S+  S  
Sbjct: 423  GLPPKQATRKAMGQISGAIVGITLVLVAVFLPMAFMQGSVGVIYQQFSLSMAVSILFSAF 482

Query: 485  VAIVLIPALCARFLKP---GVPPRTRGFLGAFNRRFDAAQGRYVGLLGRILRKPLRFTAV 541
            +A+ L PALCA  LKP   G     +GF G FNRRF++    Y   + + L++  R+  V
Sbjct: 483  LALSLTPALCATLLKPVAKGEHHERKGFFGWFNRRFESMSNGYQRWVVQALKRSGRYLLV 542

Query: 542  YAAIVAGMGLLYLGLPGGFLPEEDQGSVMVQVSLPAGATQGRTDAVNRAVEKHFLETEKD 601
            YA ++A +G  +  LP  FLP EDQG  +  + LP GA++ RT+ V   +E H    E+ 
Sbjct: 543  YAVLLAVLGYGFSQLPTAFLPTEDQGYTITDIQLPPGASRMRTEQVAAQIEAH--NAEEP 600

Query: 602  TTDTIFTLAGWSYAGSGQHTGMAFVSLKDWSERKDPQKRAQAIVERASAALSKQQRDAEV 661
                   + G+S++GSGQ+  +AF +LKDWSER      AQ+I +RA+ A + Q +DA  
Sbjct: 601  GVGNTTLILGFSFSGSGQNAALAFTTLKDWSER-GADDSAQSIADRATMAFT-QLKDAIA 658

Query: 662  YGMVPPPIEGLGQSNGFEFWLQDTSGMGADKLVQKREALVRDANKDKRLQSVRANSIANT 721
            Y ++PPPI+GLG+S GFEF LQD  GMG  +L+  R+ L+  A+K K L +VR  S+A +
Sbjct: 659  YSVLPPPIDGLGESTGFEFRLQDRGGMGHAELMAARDQLLESASKSKVLTNVREASLAES 718

Query: 722  PQLQVDIDQVKASALRLSLDDVNTTLGIAWGGNYVNDFIDRGRVKRVYVQADAPYRSAPE 781
            PQ+Q++ID+ +A+AL +S  D+ T L +A G +YVNDF ++GR++RV VQA+   RS  E
Sbjct: 719  PQVQLEIDRRQANALGVSFADIGTVLDVAVGSSYVNDFPNQGRMQRVVVQAEGDQRSQVE 778

Query: 782  DMGQWFVRGSTGAMTPFSAFATTRWSQGASQLERYNGLPAVQIQGTAAHGTSSGTAMSAV 841
            D+    VR  +G M P  AF   RW  G  QL RYNG PAV I G  A G SSG AM+ V
Sbjct: 779  DLLNIHVRNDSGKMVPLGAFVQARWVSGPVQLTRYNGYPAVSISGEPAAGYSSGEAMAEV 838

Query: 842  E-AVARKQTGTGHAWSGLSYQERLSGGQAPLLFAVSILVVFLCLAALYESWSVPFSVMLV 900
            E  VA+   GTG  W+GLS QERLSG QAPLL A+S+LVVFLCLAALYESWS+P +V+LV
Sbjct: 839  ERLVAQLPAGTGLEWTGLSLQERLSGSQAPLLMALSLLVVFLCLAALYESWSIPTAVLLV 898

Query: 901  IPLGVLGAVIAASLRGLSNDIYFQVGLLATIGLSAKNAILIIEFAEAALRRGVPLLDAVA 960
            +PLGVLGAV+A +LRG+ ND++F+VGL+  IGLSAKNAILIIEFA+  + +GV   DA  
Sbjct: 899  VPLGVLGAVLAVTLRGMPNDVFFKVGLITLIGLSAKNAILIIEFAKHLVDQGVDAADAAV 958

Query: 961  EGARLRLRPILMTSLAFLAGVVPLALATGAGSASQVAIGTGVFGGVLAATALGIFFVPLF 1020
            + ARLRLRPI+MTSLAF+ GVVPLA+A+GA SASQ AIGTGV GG+L+AT L + FVP+F
Sbjct: 959  QAARLRLRPIVMTSLAFILGVVPLAIASGASSASQQAIGTGVIGGMLSAT-LAVVFVPVF 1017

Query: 1021 YLLVKRLAAR 1030
            +++V RL+ R
Sbjct: 1018 FVVVMRLSGR 1027