Pairwise Alignments

Query, 1042 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1050 a.a., Probable efflux pump membrane transporter TtgB from Pseudomonas putida KT2440

 Score = 1097 bits (2837), Expect = 0.0
 Identities = 564/1031 (54%), Positives = 737/1031 (71%), Gaps = 7/1031 (0%)

Query: 2    IANFFIHRPVFAWVIAILIMLAGGVAIRTLPVSQYPDIAPPTVVVSANYPGASAQAVENS 61
            ++ FFI RP+FAWVIA++IML G ++I  LP++QYP IAPP + ++  YPGASAQ V+++
Sbjct: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDT 60

Query: 62   VTQVLEQQLKGIDGLLYFKSTSSSAGYADISVTFRQGIDPDTAQVQVQNKVSQATSRLPQ 121
            V QV+EQQL GID L Y  S S+S G   I+ TF QG +PDTAQVQVQNK++ AT  LPQ
Sbjct: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQ 120

Query: 122  AVQQQGVTVYKSQNNFLLIVALYDETDRRTDTDVADWMASNLRDPVSRVDGVGSVQAFGA 181
             VQQQG+ V K+  NFLL++ L  E    T  D+A+++ SN++DP+SR  GVG  Q FGA
Sbjct: 121  EVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGA 180

Query: 182  AYAMRIWLDPHRLASYQLMPSDITAAITAQNTQVSVGEIGARPSPAGQQLNATVTALSRL 241
             YAMRIWLDP +L  +QL P D+  A+ AQN QVS G++G  P+  G QLNAT+   +RL
Sbjct: 181  QYAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKTRL 240

Query: 242  QTPEQFRGIVLKTQADGAVVRLGDVARVEIGNESYAETTRLNGHPAAGAAIMLAPGANAL 301
            QT EQF  I+LK   DG+ VRLGDVA+V +G E+YA + + NG PA+G A+ LA GANAL
Sbjct: 241  QTAEQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANAL 300

Query: 302  TTAKAVKARIAEMEPSLPPGLRVAYAEDTTRFVKISIQSVLKTLLEAIALVVVVMYLFLQ 361
             TAKA++  I  +EP  PPG++  +  DTT  V  SI  V+ TL+EA+ LV +VMYLFLQ
Sbjct: 301  DTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQ 360

Query: 362  NWRATVIPAITVPVVLLGTFGVLAAFGYSINVLTLFGMVLAIGLLVDDAIVVVENVERVM 421
            N+RAT+I  +TVPVVLLGTFG+LAA G+SIN LT+F MVLAIGLLVDDAIVVVENVERVM
Sbjct: 361  NFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420

Query: 422  HEEGLDAKAATIKSMKEITGALIGIALVVSAVFLPMTFFGGSVGVIYRQFSVTIIASMAL 481
             EEGL  K AT +SM++I GAL+GIALV+SAV LPM FFGGS GVIYRQFS+TI+++M L
Sbjct: 421  SEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGL 480

Query: 482  SVVVAIVLIPALCARFLKP---GVPPRTR-GFLGAFNRRFDAAQGRYVGLLGRILRKPLR 537
            SV+VA++  PALCA  LKP   G     + GF G FNR FD +   Y   +G ILR  + 
Sbjct: 481  SVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRNFDRSVNGYERSVGAILRNKVP 540

Query: 538  FTAVYAAIVAGMGLLYLGLPGGFLPEEDQGSVMVQVSLPAGATQGRTDAVNRAVEKHFLE 597
            F   YA IV GM  L+  +P  FLPEEDQG +  QV  PAG++  RT  V   + ++ L+
Sbjct: 541  FLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMREYLLK 600

Query: 598  TEKDTTDTIFTLAGWSYAGSGQHTGMAFVSLKDWSERKDPQKRAQAIVERASAALSKQQR 657
             E DT  ++FT+ G+++AG GQ +GMAF+ LK W ER   +    A+ +RA        R
Sbjct: 601  DEADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWDER-SKENSVFALAQRAQQHFF-TFR 658

Query: 658  DAEVYGMVPPPIEGLGQSNGFEFWLQDTSGMGADKLVQKREALVRDANKDKRLQSVRANS 717
            DA V+   PP +  LG + GF+ +LQD  G+G +KL++ R   +  A + K L +VR N 
Sbjct: 659  DAMVFAFAPPAVLELGNATGFDVFLQDRGGVGHEKLMEARNQFLAKAAQSKILSAVRPNG 718

Query: 718  IANTPQLQVDIDQVKASALRLSLDDVNTTLGIAWGGNYVNDFIDRGRVKRVYVQADAPYR 777
            + + PQ Q+ ID  +ASAL +++ D+N TL IA G +YVNDFIDRGRVK+VY+Q +   R
Sbjct: 719  LNDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKVYIQGEPSAR 778

Query: 778  SAPEDMGQWFVRGSTGAMTPFSAFATTRWSQGASQLERYNGLPAVQIQGTAAHGTSSGTA 837
             +PED+ +W+VR   G M PFS+FA   W+ G+ +L RYNG+ A++I G  A G S+G A
Sbjct: 779  MSPEDLQKWYVRNGAGEMVPFSSFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGYSTGEA 838

Query: 838  MSAVEAVARK-QTGTGHAWSGLSYQERLSGGQAPLLFAVSILVVFLCLAALYESWSVPFS 896
            M+ VE +A +  +G G +W+G+SY+E+LSG Q P LFA+S+L VFLCLAALYESWS+P +
Sbjct: 839  MAEVERIAGELPSGIGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAALYESWSIPIA 898

Query: 897  VMLVIPLGVLGAVIAASLRGLSNDIYFQVGLLATIGLSAKNAILIIEFAEAALRRGVPLL 956
            V+LV+PLG++GA+IA SLRGLSND+YF VGLL TIGL+AKNAILI+EFA+    +G  L 
Sbjct: 899  VVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHEQGRSLY 958

Query: 957  DAVAEGARLRLRPILMTSLAFLAGVVPLALATGAGSASQVAIGTGVFGGVLAATALGIFF 1016
            DA  E  R+RLRPI+MTSLAF+ GVVPL +A+GAG+ SQ AIGTGV GG+++AT L IF+
Sbjct: 959  DAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISATVLAIFW 1018

Query: 1017 VPLFYLLVKRL 1027
            VPLF++ V  L
Sbjct: 1019 VPLFFVAVSSL 1029