Pairwise Alignments

Query, 1042 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1044 a.a., RND multidrug efflux transporter from Agrobacterium fabrum C58

 Score =  956 bits (2470), Expect = 0.0
 Identities = 508/1029 (49%), Positives = 697/1029 (67%), Gaps = 9/1029 (0%)

Query: 2    IANFFIHRPVFAWVIAILIMLAGGVAIRTLPVSQYPDIAPPTVVVSANYPGASAQAVENS 61
            +A FFI RP+FAWV+AI IMLAG +AI  LP++QYP++APP + +  NYPGAS + +  S
Sbjct: 1    MARFFIDRPIFAWVVAIFIMLAGLLAIPMLPIAQYPNVAPPQISIGTNYPGASPEDIYQS 60

Query: 62   VTQVLEQQLKGIDGLLYFKSTSSSAGYADISVTFRQGIDPDTAQVQVQNKVSQATSRLPQ 121
            VT+ +E++L G+ GL+YF+STS S+G   I+VTF  G +   AQV+VQN++++   RLP+
Sbjct: 61   VTRPIEEELNGVPGLIYFESTSESSGRISINVTFEPGTNIGEAQVEVQNRIARVEPRLPR 120

Query: 122  AVQQQGVTVYKSQNNFLLIVALYDETDRRTDT-DVADWMASNLRDPVSRVDGVGSVQAFG 180
            +V QQG+ V ++  +FL++VAL    D  TD   + D+++ N+   + RV GVGS Q F 
Sbjct: 121  SVTQQGLRVEQAGTSFLMMVAL-TSVDGNTDAIGLGDYLSRNVLGELRRVPGVGSAQLFA 179

Query: 181  AAYAMRIWLDPHRLASYQLMPSDITAAITAQNTQVSVGEIGARPSPAGQQLNATVTALSR 240
               +MRIW+DP ++    L   D+  AI AQN+QV+ G IGA P+P GQQ++ATV    +
Sbjct: 180  TQRSMRIWMDPDKMLGLSLTSDDVINAIQAQNSQVAAGRIGASPNPVGQQISATVNVQGQ 239

Query: 241  LQTPEQFRGIVLKTQADGAVVRLGDVARVEIGNESYAETTRLNGHPAAGAAIMLAPGANA 300
            L +PE+F  IVL+   DG+ VRL DVARVE+G ESY  ++RLNG P+A   + L+P ANA
Sbjct: 240  LTSPEEFGSIVLRANPDGSSVRLRDVARVEVGGESYNFSSRLNGKPSAAIGVQLSPTANA 299

Query: 301  LTTAKAVKARIAEMEPSLPPGLRVAYAEDTTRFVKISIQSVLKTLLEAIALVVVVMYLFL 360
            + T++ V+A + E+    P G+      DT+ FVKISI+ V+ TL+EA+ LV VVM++FL
Sbjct: 300  MQTSEGVRATMEELSRYFPQGIEYEIPYDTSPFVKISIEKVIHTLIEAMILVFVVMFVFL 359

Query: 361  QNWRATVIPAITVPVVLLGTFGVLAAFGYSINVLTLFGMVLAIGLLVDDAIVVVENVERV 420
            QN R T+IP + VPV LLGT  V+   G+SINVLT+F MVLAIG+LVDDAIVVVENVER+
Sbjct: 360  QNIRYTIIPTLVVPVALLGTCAVMYVSGFSINVLTMFAMVLAIGILVDDAIVVVENVERI 419

Query: 421  MHEEGLDAKAATIKSMKEITGALIGIALVVSAVFLPMTFFGGSVGVIYRQFSVTIIASMA 480
            M EE L  K AT K+M +I+GA+IGI LV++AVF+PM FF G+VG+IY+QFS+T++ S+ 
Sbjct: 420  MAEEHLSPKEATRKAMGQISGAIIGITLVLTAVFVPMAFFPGAVGIIYQQFSLTMVVSIL 479

Query: 481  LSVVVAIVLIPALCARFLKP--GVPPRTRGFLGAFNRRFDAAQGRYVGLLGRILRKPLRF 538
             S  +A+ L PALCA FLKP        +GF G FNR FD A  +Y   +G I+++  RF
Sbjct: 480  FSGFLALSLTPALCASFLKPIKAGHHEKKGFFGWFNRNFDKASHKYSSSVGGIIKRSGRF 539

Query: 539  TAVYAAIVAGMGLLYLGLPGGFLPEEDQGSVMVQVSLPAGATQGRTDAVNRAVEKHFLET 598
              +YAA++AG+G  Y+ LP  FLP EDQG ++V +  PA A+  RT    + +EK F+  
Sbjct: 540  MIIYAALLAGLGWAYMQLPSSFLPNEDQGYLIVDIQAPAEASTERTLQSIQQIEKIFM-- 597

Query: 599  EKDTTDTIFTLAGWSYAGSGQHTGMAFVSLKDWSERKDPQKRAQAIVERASAALSKQQRD 658
            E+   + +  ++G+S++GSGQ+ G+AF +LKDWSER  P+  A AI  R +  L     D
Sbjct: 598  EEPAVERVIAISGFSFSGSGQNAGLAFATLKDWSER-GPEDSAAAISARINGKLWGLP-D 655

Query: 659  AEVYGMVPPPIEGLGQSNGFEFWLQDTSGMGADKLVQKREALVRDANKDKRLQSVRANSI 718
            A  + + PPPI+GLG S+GF F LQD SG G   L      L+  A +   L  +R   +
Sbjct: 656  AMSFALSPPPIQGLGNSSGFTFRLQDRSGAGQTALSAAGAQLMAAARQSPVLAGLRIEGM 715

Query: 719  ANTPQLQVDIDQVKASALRLSLDDVNTTLGIAWGGNYVNDFIDRGRVKRVYVQADAPYRS 778
             +  Q+ + ID+ KA+   ++  D+N T+    G +YVNDF + GR++RV VQA+   R 
Sbjct: 716  PDAAQVNLIIDREKANTFGVTFSDINATISANMGSSYVNDFPNAGRMQRVTVQAEQGQRM 775

Query: 779  APEDMGQWFVRGSTGAMTPFSAFATTRWSQGASQLERYNGLPAVQIQGTAAHGTSSGTAM 838
              ED+    VR + G M P S+FAT  W +G SQ+  YNG PA+++ G +A G SSG A+
Sbjct: 776  KTEDLLNLNVRNANGGMVPVSSFATVEWVRGPSQVVGYNGYPAIRVSGQSAPGYSSGDAI 835

Query: 839  SAVEAVARK-QTGTGHAWSGLSYQERLSGGQAPLLFAVSILVVFLCLAALYESWSVPFSV 897
            + +E +AR+   G G  W+G S QE  SG QAP L  +S+L VFL LAALYESWS+P SV
Sbjct: 836  AEMERLARELPGGFGFEWTGQSLQEIQSGSQAPALIGLSVLFVFLLLAALYESWSIPLSV 895

Query: 898  MLVIPLGVLGAVIAASLRGLSNDIYFQVGLLATIGLSAKNAILIIEFAEAALRRGVPLLD 957
            MLV+PLGV+G+V A  LRG+ ND+YF VGL+A IGLSAKNAILIIEFA+     G    D
Sbjct: 896  MLVVPLGVIGSVAAVMLRGMPNDVYFLVGLVAIIGLSAKNAILIIEFAKDLRAEGKSTYD 955

Query: 958  AVAEGARLRLRPILMTSLAFLAGVVPLALATGAGSASQVAIGTGVFGGVLAATALGIFFV 1017
            A  E A LR RPILMTSLAF  GV+P+A+A+GA +ASQ AIGTGV GG+++AT L IFFV
Sbjct: 956  ATVEAAHLRFRPILMTSLAFSLGVLPMAIASGASAASQNAIGTGVLGGMISATILAIFFV 1015

Query: 1018 PLFYLLVKR 1026
            P+F++ V +
Sbjct: 1016 PVFFVFVMK 1024