Pairwise Alignments

Query, 158 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 72.0 bits (175), Expect = 1e-17
 Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 6/154 (3%)

Query: 3   ERYYRELLRYFTRKAGDGDTAADVVQEAYARVLIHQDGGGTVLEPRAFLYQTGRNVLANQ 62
           + +Y +LL++ TR+  D   AADV QE Y +++   +    VL  R+F+++   N LA  
Sbjct: 14  QEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIFRVAGN-LAID 72

Query: 63  AARR----AAETRMLDTLALVSDHSAPSVERHVGARQQLDRLVALLEDMPRKRRNAFILV 118
           A RR    AA     D    V+   AP+ E  + AR++L  L   L  +P   R A +L 
Sbjct: 73  ALRREQRIAASHDDSDGACEVAC-PAPAPEAALLARERLQILDQALLQLPDNARQALLLN 131

Query: 119 RIHGLSYAQTAAHMEISEKAVERHMTRALLDCAG 152
           R+ GL+  Q A  + +SE  V +++ +AL  C G
Sbjct: 132 RVEGLTQKQVAQRLGVSESMVAKYIGQALRHCRG 165