Pairwise Alignments

Query, 158 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

 Score = 64.3 bits (155), Expect = 9e-16
 Identities = 46/149 (30%), Positives = 69/149 (46%), Gaps = 6/149 (4%)

Query: 9   LLRYFTRKAGDGDTAADVVQEAYARVLIHQDGGGTVLEPRAFLYQTGRNVLANQAARRAA 68
           LLR   R  G+  TA D++QE Y RV     G   +     F++QT RN+  +    R  
Sbjct: 17  LLRTLQRMVGNPSTAEDLLQETYLRVS-RALGERPIEHIEPFVFQTARNLALDHLRARRV 75

Query: 69  ETRML-DTLALVSDHS----APSVERHVGARQQLDRLVALLEDMPRKRRNAFILVRIHGL 123
           + RML D +     HS    A S E    A Q L  L   L  +  +++  FIL R+HG 
Sbjct: 76  QARMLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLSERQQRIFILSRLHGA 135

Query: 124 SYAQTAAHMEISEKAVERHMTRALLDCAG 152
           +Y + A  + +S   V++ +   +  C G
Sbjct: 136 TYLEIAEQLSVSPSTVQKELKLIMAICMG 164