Pairwise Alignments

Query, 158 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

Subject, 180 a.a., sigma factor from Agrobacterium fabrum C58

 Score = 68.9 bits (167), Expect = 4e-17
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 7/151 (4%)

Query: 5   YYRELLRYFTRKAGDGDTAADVVQEAYARVLIHQDGGGTVLEPRAFLYQTGRNVLANQAA 64
           +Y ++++    ++     A ++V + Y ++ +  D        +AFL +   N+  ++  
Sbjct: 24  HYGDIIKAVGGRSRSDGAAREIVHDLYVKLALQPDALSGKRSIKAFLCRAASNMRIDRIR 83

Query: 65  RRAAETRML-----DTLALVSDHSAPSVERHVGARQQLDRLVALLEDMPRKRRNAFILVR 119
           R   E+R+      D  A+ +  +AP     V AR  L  L   + D+P KRR AF+L R
Sbjct: 84  REQLESRLFSGSDEDARAVFAADNAPDQGLAVEAR--LTVLKQAIADLPEKRRTAFVLHR 141

Query: 120 IHGLSYAQTAAHMEISEKAVERHMTRALLDC 150
           +H LS  Q A+ ++IS   V+RH+ RAL  C
Sbjct: 142 LHHLSPDQIASKLKISRNMVDRHLRRALSHC 172