Pairwise Alignments

Query, 330 a.a., Fe2+-dicitrate sensor, membrane component from Variovorax sp. SCN45

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score =  105 bits (263), Expect = 1e-27
 Identities = 91/276 (32%), Positives = 132/276 (47%), Gaps = 46/276 (16%)

Query: 56  EQVSRKFGMLPGRLSMPTLGRTVRADR----RVAVKTLALLLTAAPAGWLAWRVSPAREW 111
           +QV+++ G+    ++   +G+ +R  R    +  V    +LL AA AGW       A   
Sbjct: 139 KQVAQRLGVSESMVAK-YIGQALRHCRGRLKQAGVAASVVLLVAAVAGW-----QQAPIL 192

Query: 112 LADHRTATGERRELRLPDGTRIQLNTATAVDLAYDAKLRLVRLRAGEILIDTAPDAVASS 171
           LAD+ TA GER+ + L DGTR+ LN+A+A+ +A+    R V L AGE L +TA D+    
Sbjct: 193 LADYHTAVGERQVITLTDGTRVTLNSASALSVAFSEHERRVVLDAGEALFETADDS---- 248

Query: 172 DPAYRPFVVETAQGRLKALGTRFVVRQHEDRRSHVAVLEGAVELRPDDARGLAMVLRAGE 231
               RPFVVETA  R++     F V+    R  HV +  G  ++   +   LA+   AG 
Sbjct: 249 ----RPFVVETAGARVQGNAATFSVQ----RDGHVVLARGEAKVGEHE---LAVAADAGT 297

Query: 232 QAGFSDSAIDAVTPVGPEADDWSRGVLRARNMRLQDFLAELGRYRPG-VLRCDPAVADLR 290
           Q                    W RG L      L   L EL RYR G ++  D  +A + 
Sbjct: 298 QMA------------------WQRGKLIFNGKPLGQVLTELERYRHGRIVLSDSKLAAME 339

Query: 291 VSGVFQLNDTGPVLDSLPQALPVDVLYRTRYWVTVV 326
           VSGVF L++   +L +L Q   + V Y    W+ VV
Sbjct: 340 VSGVFDLDEPEALLRTLEQRYGLKVTYLP--WLAVV 373