Pairwise Alignments

Query, 175 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 171 a.a., FIG006045: Sigma factor, ECF subfamily from Variovorax sp. SCN45

 Score =  191 bits (484), Expect = 7e-54
 Identities = 94/170 (55%), Positives = 126/170 (74%), Gaps = 7/170 (4%)

Query: 1   MAADSVLHHPHIQTLYCDHHGWLQGWLRKKLGNAFDAADLAQDTFLRILAAPDDTPEKQG 60
           MAA     HP I++LY DHHGWL+GWL KKLG+    ADLA DTF+R+LA       KQ 
Sbjct: 1   MAASEFPAHPQIESLYSDHHGWLRGWLGKKLGDMHQGADLAHDTFVRLLA-------KQE 53

Query: 61  DWQLREPRAYLTVVAKRLLANLYRRRSLEQAYFEALSALPEPQAPSPEQQAIILETLQEI 120
              ++EPRA+LT VA+R+LAN +RR+ LE+AY EAL+ +P+  APS E++AI+L+TL EI
Sbjct: 54  AVAIQEPRAFLTTVAQRVLANHWRRQQLERAYLEALAQVPQAMAPSEEERAILLQTLTEI 113

Query: 121 DAMLDGLAPPVRRAFLMAQLEGLGYAEIAATLGVSERTVKRYMAEAMARC 170
           D +L+GL PPVRR FL+ QL+GLG+AE+AA + +S  TVKRY+ +A  +C
Sbjct: 114 DRLLNGLPPPVRRVFLLTQLDGLGHAEVAALMSISITTVKRYLVKAAMQC 163