Pairwise Alignments

Query, 175 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  166 bits (420), Expect = 2e-46
 Identities = 86/159 (54%), Positives = 112/159 (70%), Gaps = 7/159 (4%)

Query: 12  IQTLYCDHHGWLQGWLRKKLGNAFDAADLAQDTFLRILAAPDDTPEKQGDWQLREPRAYL 71
           ++ LY  HH WL GWLR++LG    AADLAQDT++R+L A +         QL EPRA+L
Sbjct: 15  VEGLYHAHHNWLTGWLRRRLGCPHSAADLAQDTYMRLLQAREAP-------QLVEPRAFL 67

Query: 72  TVVAKRLLANLYRRRSLEQAYFEALSALPEPQAPSPEQQAIILETLQEIDAMLDGLAPPV 131
             VAKR+L N +RR+ LE+AY +AL+ +PE  AP  EQ+AII ETL  +D +LDGL P V
Sbjct: 68  ATVAKRVLCNHFRRQELERAYLQALAQVPEEVAPCEEQKAIIFETLLALDHLLDGLPPLV 127

Query: 132 RRAFLMAQLEGLGYAEIAATLGVSERTVKRYMAEAMARC 170
           +RAFL+AQ++GLG  EIA  LG+S  TVKRY+ +A  RC
Sbjct: 128 KRAFLLAQVDGLGQGEIARELGISLATVKRYLNKAAMRC 166