Pairwise Alignments

Query, 175 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 70.9 bits (172), Expect = 1e-17
 Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 8/152 (5%)

Query: 16  YCDHHGWLQGWLRKKLGNAFDAADLAQDTFLRILAAPDDTPEKQGDWQLREPRAYLTVVA 75
           + DH+  L G   +KL +   A DL  D F+R+L  P +        Q+ +PRAYL   A
Sbjct: 7   FLDHYHELIGTWTRKLRSRQQAEDLTHDAFVRVLETPRE--------QVEQPRAYLHQAA 58

Query: 76  KRLLANLYRRRSLEQAYFEALSALPEPQAPSPEQQAIILETLQEIDAMLDGLAPPVRRAF 135
           + +  + +RR    QA            +  PE     LE    ++  L  L    R+ F
Sbjct: 59  RNIAVDGFRREDRRQALEREAFEEGATGSGDPEAYVHALELADSVERALAELPLNCRQVF 118

Query: 136 LMAQLEGLGYAEIAATLGVSERTVKRYMAEAM 167
           +  +LEGL  AEIA  +G+S+  V++YM   +
Sbjct: 119 IWQKLEGLTQAEIAERMGLSKNMVEKYMIRTL 150