Pairwise Alignments

Query, 175 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  152 bits (385), Expect = 2e-42
 Identities = 79/173 (45%), Positives = 114/173 (65%), Gaps = 7/173 (4%)

Query: 1   MAADSVLHHPHIQTLYCDHHGWLQGWLRKKLGNAFDAADLAQDTFLRILAAPDDTPEKQG 60
           M  +  L    +  LY  HH WL+GWLR ++G +  AADLAQDTF+R+L A   +P    
Sbjct: 1   MQINDTLKPTEVALLYQSHHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQMSP---- 56

Query: 61  DWQLREPRAYLTVVAKRLLANLYRRRSLEQAYFEALSALPEPQAPSPEQQAIILETLQEI 120
              L+EPRAYL+ +A+ L+ + +RRR+LE+AY E L+ LPE + PS E + +IL++L+ +
Sbjct: 57  ---LKEPRAYLSSIARGLMIDQFRRRALERAYQEGLAHLPEAEVPSEEDKLVILDSLERL 113

Query: 121 DAMLDGLAPPVRRAFLMAQLEGLGYAEIAATLGVSERTVKRYMAEAMARCILL 173
           D  L  L P VR+AFL+AQL+GL   ++A  LGVS  TV+R +A+A+  C  L
Sbjct: 114 DRALQQLKPRVRQAFLLAQLDGLSIVQVAQRLGVSRATVERDLAKALGACYRL 166