Pairwise Alignments

Query, 190 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 64.3 bits (155), Expect = 1e-15
 Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 10/142 (7%)

Query: 21  LTRFLRRNWRDEAEVPDLRQDVYVRIYESAAKAVPELVKP--FVFTTARNLLIDRARRAQ 78
           LT +LRR         DL QD Y+R+ +  A+  P+LV+P  F+ T A+ +L +  RR +
Sbjct: 26  LTGWLRRRLGCPHSAADLAQDTYMRLLQ--AREAPQLVEPRAFLATVAKRVLCNHFRRQE 83

Query: 79  IVSIEIIADLDALDFSADELTP--ERHAAGRGELRLLQTALDALPPKCRRVVELRKIDGL 136
           +      A L AL    +E+ P  E+ A     L  L   LD LPP  +R   L ++DGL
Sbjct: 84  LER----AYLQALAQVPEEVAPCEEQKAIIFETLLALDHLLDGLPPLVKRAFLLAQVDGL 139

Query: 137 PQRDVAILLGITEDTVERQVSR 158
            Q ++A  LGI+  TV+R +++
Sbjct: 140 GQGEIARELGISLATVKRYLNK 161