Pairwise Alignments

Query, 190 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

 Score = 52.0 bits (123), Expect = 6e-12
 Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 1   LVLSDLDNWFVSEVLPMEAALTRFLRRNWRDEAEVPDLRQDVYVRIYESAAKAVPELVKP 60
           L  S  D+  +   +   + L +   R     +   D+ QD + R+  S A  +    K 
Sbjct: 5   LSTSKCDSPLLQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRL--STAPQITSSFKA 62

Query: 61  ---FVFTTARNLLIDRARRAQIVSIEIIADLDALDFSADELTPERHAAGRGELRLLQTAL 117
              ++F   RNL ID  R+  +      ++ + ++      +PE     R  L  +  AL
Sbjct: 63  QLSYLFQIVRNLAIDHYRKQAMELKYSGSEEEGMNVVVQNASPEATHINRAALNDIAEAL 122

Query: 118 DALPPKCRRVVELRKIDGLPQRDVAILLGITEDTV 152
           + LPP+ R   E+ +++G+PQ+D+A  LG++   V
Sbjct: 123 NELPPRTRYAFEMYRLNGVPQKDIAKELGVSPTLV 157