Pairwise Alignments

Query, 190 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 66.2 bits (160), Expect = 3e-16
 Identities = 48/145 (33%), Positives = 68/145 (46%), Gaps = 9/145 (6%)

Query: 21  LTRFLRRNWRDEAEVPDLRQDVYVRIYESAAKAVPELVKPFVFTTARNLLIDRARRAQIV 80
           L  FL           D+  D Y+R+ E       E  + F++ TA NL++DR RR  + 
Sbjct: 8   LVSFLSARLGSRQAAEDVAHDAYLRVLERTGSEQIEHPRAFLYRTALNLVVDRHRRQLVR 67

Query: 81  SIEIIADLDALD----FSADELTPERHAAGRGELRLLQTALDALPPKCRRVVELRKIDGL 136
             E    LDALD      + EL  +     R  L L+Q ALD L   CR    LRKI+GL
Sbjct: 68  QAE---PLDALDADSRLHSSELQHDLQLDQR--LALMQKALDELSRPCRDSFLLRKIEGL 122

Query: 137 PQRDVAILLGITEDTVERQVSRGVR 161
             + +A  LGI+   VE+ +   ++
Sbjct: 123 SHQQIAERLGISRSLVEKHIVNAMK 147