Pairwise Alignments

Query, 190 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 75.5 bits (184), Expect = 1e-18
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 1/153 (0%)

Query: 21  LTRFLRRNWRDEAEVPDLRQDVYVRIYESAAKAVPEL-VKPFVFTTARNLLIDRARRAQI 79
           L +FL R   D     D+ Q+ Y+++     +AVP L  + F+F  A NL ID  RR Q 
Sbjct: 20  LLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIFRVAGNLAIDALRREQR 79

Query: 80  VSIEIIADLDALDFSADELTPERHAAGRGELRLLQTALDALPPKCRRVVELRKIDGLPQR 139
           ++        A + +     PE     R  L++L  AL  LP   R+ + L +++GL Q+
Sbjct: 80  IAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDNARQALLLNRVEGLTQK 139

Query: 140 DVAILLGITEDTVERQVSRGVRALADAMLSSGV 172
            VA  LG++E  V + + + +R     +  +GV
Sbjct: 140 QVAQRLGVSESMVAKYIGQALRHCRGRLKQAGV 172