Pairwise Alignments

Query, 190 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 169 a.a., ECF family RNA polymerase sigma factor from Agrobacterium fabrum C58

 Score = 61.2 bits (147), Expect = 9e-15
 Identities = 44/161 (27%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 3   LSDLDNWFVSEVLPMEAALTRFLRRNWRDEAEVPDLRQDVYVRIYESAAKAVPELVKPFV 62
           ++  D+  V+     E  + R+L    R +A+  DL Q+ ++++  + A A+   V P++
Sbjct: 1   MASYDDELVAAFSRNERRIKRYLISRTRSQADSDDLAQEAWIKLARNGAAALAAPV-PYL 59

Query: 63  FTTARNLLID--RARRAQIVSIEIIADLDALDFSADELT-PERHAAGRGELRLLQTALDA 119
              AR+L +D  R ++ ++ S     D+D L   ADE   PE+    R ++R L   +D 
Sbjct: 60  MRIARSLAVDHDRGQKRKLTS----NDIDVLMSVADEQPGPEKQFEDRDQVRCLIEIIDE 115

Query: 120 LPPKCRRVVELRKIDGLPQRDVAILLGITEDTVERQVSRGV 160
           LP + R+++   ++D     D+A   G++  TVE +V + V
Sbjct: 116 LPERQRKMLVACRLDQRRHADIAAEFGVSIRTVELEVRKAV 156