Pairwise Alignments

Query, 349 a.a., no description from Variovorax sp. SCN45

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 92.4 bits (228), Expect = 2e-23
 Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 40/239 (16%)

Query: 100 RFSTQRIAAGMLIAAAGCSWLGWKYTQDWRSEHYATAVGARQSVSLSDGSVLTLNTATHL 159
           R     +AA +++  A  +  GW+      ++ Y TAVG RQ ++L+DG+ +TLN+A+ L
Sbjct: 166 RLKQAGVAASVVLLVAAVA--GWQQAPILLAD-YHTAVGERQVITLTDGTRVTLNSASAL 222

Query: 160 RTVVNANGRKVWLEDGEAYFDIAHDKAHPFVVIAGDRRITVLGTRFVVRREGDRVNVVVE 219
               + + R+V L+ GEA F+ A D + PFVV     R+      F V+R+G   +VV+ 
Sbjct: 223 SVAFSEHERRVVLDAGEALFETADD-SRPFVVETAGARVQGNAATFSVQRDG---HVVLA 278

Query: 220 EGRVQIASAGNDRGADKNAKSSEPTVLVRNQAAVASANNVLVMSKAPKQIDDELSWRQGK 279
            G  ++                       ++ AVA+                +++W++GK
Sbjct: 279 RGEAKVGE---------------------HELAVAA------------DAGTQMAWQRGK 305

Query: 280 LVFDQTSLGDAAAQFNRYNTRKLVIADPALARIRIGGSFDANNMAGFVALLKQGFGLAV 338
           L+F+   LG    +  RY   ++V++D  LA + + G FD +     +  L+Q +GL V
Sbjct: 306 LIFNGKPLGQVLTELERYRHGRIVLSDSKLAAMEVSGVFDLDEPEALLRTLEQRYGLKV 364