Pairwise Alignments

Query, 405 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Variovorax sp. SCN45

Subject, 388 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

 Score =  121 bits (303), Expect = 4e-32
 Identities = 93/350 (26%), Positives = 157/350 (44%), Gaps = 9/350 (2%)

Query: 36  AAPAAAPAPAPAGDTLVVKIGHVAPTSGPIAHLGKDNEMGAKMAIEDLNAKGIKIGDKTA 95
           AA  A  A          +IG  A  +GP A  G      A++A+E +N  G   G    
Sbjct: 17  AAGLAGFAGGAFAQGATTRIGFQAGLTGPAAADGNAGLAAARLAVEQINGAG---GVNGK 73

Query: 96  KFELVAEDDAGDPKQGTAVAQKLVDEKVNGVVGHLNSGTTIPASKLYSDAGIPQISPSAT 155
           K ELV  DD G P+Q   +A ++V + V  VV    SG +  A+ ++  A IP I+  A 
Sbjct: 74  KLELVVYDDQGKPEQAVPIANRMVGDGVRAVVSAGFSGPSRAAAPVFQRAKIPYIAAIAF 133

Query: 156 NPKYTRQGFKTTFRVVADDTQLGGTLGKYAVETLKGKNIAVIDDRTAYGQGVAEEFEKSA 215
            P+ TR G    FRV +     G    K   + L  K   ++  +T +G+ +A  F+++A
Sbjct: 134 APEITRTG-NYMFRVTSVGEVQGRAAAKLMGDVLHKKRAVLLTIKTDFGKTLAAGFKEAA 192

Query: 216 KAAGATIVGHEFTTDKSTDFNAILTKLKSAKPDVLFFGGMDAVGGPMLKQVKQLGLNVKF 275
              G  ++           F  ++  +K+  PDV++  G     GP++ Q++  G+    
Sbjct: 193 PKFGVQLLKEYEYAPSDRQFGPLIASIKADNPDVIYATGFYFTAGPLVAQLRSAGVTADV 252

Query: 276 MGGDGLCTGELPKLAGDAIGEDMVVCAEAGGVDGDFKQP-LEDFKAKFKTKNGVEVQIYA 334
           +G + L + +   +AG A  E  V+      +D   + P + DF   ++     + +  A
Sbjct: 253 VGAESLSSQQYIDIAGQA-AEGTVI---TNVIDWGSQLPEIADFLKAYEKATNSKAEAAA 308

Query: 335 PYVYDAVNVLAEAMVKAGSSDPEKYLPEVGKVQYKGVTGPIAFDEKGDIK 384
              + AV  LA A+ KA S DP+K    +  +      G I+F++  ++K
Sbjct: 309 TSTHAAVVALAAAIRKAKSDDPDKIRAALETLDVTTAIGRISFNKLHEVK 358