Pairwise Alignments

Query, 405 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Variovorax sp. SCN45

Subject, 378 a.a., branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) from Pseudomonas putida KT2440

 Score =  203 bits (517), Expect = 6e-57
 Identities = 132/347 (38%), Positives = 188/347 (54%), Gaps = 16/347 (4%)

Query: 53  VKIGHVAPTSGPIAHLGKDNEMGAKMAIEDLNAKGIKIGDKTAKFELVAEDDAGDPKQGT 112
           VKIG   P +G  A  G+    GA+ A + +NA G   G+K     LV  DDA +PKQ  
Sbjct: 29  VKIGVAGPMTGANAAFGEQYMKGAQAAADKINAAGGVNGEKIV---LVKGDDACEPKQAV 85

Query: 113 AVAQKLVDE-KVNGVVGHLNSGTTIPASKLYSDAGIPQISPSATNPKYTRQGFKTTFRVV 171
           AVA +LVD+ KV GVVGH  S  TIPAS++Y +AG+  I+P +TNP+ T +G    FR+ 
Sbjct: 86  AVANRLVDQDKVIGVVGHFCSSNTIPASEVYDEAGVIAITPGSTNPQVTERGLSAMFRMC 145

Query: 172 ADDTQLGGTLGKYAVETLKGKNIAVIDDRTAYGQGVAEEFEKSAKAAGATIVGHEFTTDK 231
             D Q G   G Y V+ LKGK +AV+ D+  YGQG+A+  +   +  G   V +E  T  
Sbjct: 146 GRDDQQGIVAGDYIVDVLKGKKVAVLHDKDTYGQGLADATKAQLEKRGVKPVLYEGLTRG 205

Query: 232 STDFNAILTKLKSAKPDVLFFGGMDAVGGPMLKQVKQLGL-NVKFMGGDGLCTGELPKLA 290
             DF+A++TK++S   DV++FGG+    GP+++Q+++ GL +VKFM  DG+ T EL   A
Sbjct: 206 EKDFSAVVTKIRSTGADVVYFGGLHPEAGPLVRQLREQGLKDVKFMSDDGIVTDELVSTA 265

Query: 291 GDAIGEDMVVCAEAGGVD----GDFKQPLEDFKAKFKTKNGVEVQIYAPYVYDAVNVLAE 346
           G A   D V      G D     D K  +E+F+     K G E + Y  Y Y ++  LA 
Sbjct: 266 GGAQYVDGVYM--TFGADPRLLPDSKAVVEEFR-----KAGTEPEGYTLYAYASLQALAA 318

Query: 347 AMVKAGSSDPEKYLPEVGKVQYKGVTGPIAFDEKGDIKNGALTLYTY 393
           A   A S+  E     +     + V G   +D KGD+      +Y +
Sbjct: 319 AFNGAKSNKGEDAAKWLKANPVQTVMGEKKWDSKGDLTVSDYVVYQW 365