Pairwise Alignments

Query, 405 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Variovorax sp. SCN45

Subject, 366 a.a., branched-chain amino acid ABC transporter substrate-binding protein from Magnetospirillum magneticum AMB-1

 Score =  211 bits (536), Expect = 4e-59
 Identities = 122/344 (35%), Positives = 185/344 (53%), Gaps = 8/344 (2%)

Query: 53  VKIGHVAPTSGPIAHLGKDNEMGAKMAIEDLNAKGIKIGDKTAKFELVAEDDAGDPKQGT 112
           + IG   P SG  A  G+  + GA  A+ED+NAKG  +G K A   L   DDA DPKQ  
Sbjct: 25  ITIGVAGPLSGSEAAFGEQFKRGAMKAVEDINAKGGVLGQKLA---LTLGDDACDPKQAV 81

Query: 113 AVAQKLVDEKVNGVVGHLNSGTTIPASKLYSDAGIPQISPSATNPKYTRQGFKTTFRVVA 172
           AVA ++  +KV  V GH  SG++IPAS++Y++ GI QISP++TNPK+T +G    FR   
Sbjct: 82  AVANEMAAKKVPFVAGHFCSGSSIPASEVYAETGILQISPASTNPKFTERGLPNIFRTCG 141

Query: 173 DDTQLGGTLGKYAVETLKGKNIAVIDDRTAYGQGVAEEFEKSAKAAGATIVGHEFTTDKS 232
            D Q G     Y  +  K K +A++ D++AYG+G+A++   +   AG     +E  +   
Sbjct: 142 RDDQQGVIAADYIAKHQKDKVVAIVHDKSAYGKGLADQTRDALGKAGIKAALYEAISAGE 201

Query: 233 TDFNAILTKLKSAKPDVLFFGGMDAVGGPMLKQVKQLGLNVKFMGGDGLCTGELPKLAGD 292
            D++A++TKLK++K D+L+FGG     G +++Q++  G+  + MGGD L T E   + G 
Sbjct: 202 KDYSALVTKLKASKVDLLYFGGYKTEAGLIVRQLRDQGMQTRLMGGDALVTEEYWAITG- 260

Query: 293 AIGEDMVVCAEAGGVDGDFKQPLEDFKAKFKTKNGVEVQIYAPYVYDAVNVLAEAMVKAG 352
           A GE  ++           K P      K+      E + Y  Y Y  +   A+A  KA 
Sbjct: 261 AAGEGTMMTFS----PDPRKNPANADLVKYYRAQKYEPEAYTLYTYGTIQAWAQAAEKAK 316

Query: 353 SSDPEKYLPEVGKVQYKGVTGPIAFDEKGDIKNGALTLYTYKGG 396
           ++D +K    +   ++    G I FD KGD+      +Y +KGG
Sbjct: 317 TTDWKKVAAVLKAEKFDTAIGKIGFDAKGDVAAPGYVMYVWKGG 360