Pairwise Alignments

Query, 405 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Variovorax sp. SCN45

Subject, 370 a.a., branched-chain amino acid ABC transporter substrate-binding protein from Dickeya dianthicola ME23

 Score =  204 bits (520), Expect = 3e-57
 Identities = 128/348 (36%), Positives = 184/348 (52%), Gaps = 15/348 (4%)

Query: 41  APAPAPAGDTLVVKIGHVAPTSGPIAHLGKDNEMGAKMAIEDLNAKGIKIGDKTAKFELV 100
           A A + A +   +K+  V   SGP+A  G     GA+ AI D+NAKG   G+K    E  
Sbjct: 15  AAAMSHAANAADIKVAIVGAMSGPVAQYGDMEFTGARQAIADINAKGGVNGNKLVGVEY- 73

Query: 101 AEDDAGDPKQGTAVAQKLVDEKVNGVVGHLNSGTTIPASKLYSDAGIPQISPSATNPKYT 160
             DDA DPKQ  AVA K+++E ++ V+GHL S +T PAS +Y D G+  I+P+AT P  T
Sbjct: 74  --DDACDPKQAVAVANKVINEGIHYVIGHLCSSSTQPASDIYEDEGVIMITPAATAPDLT 131

Query: 161 RQGFKTTFRVVADDTQLGGTLGKYAVETLKGKNIAVIDDRTAYGQGVAEEFEKSAKAAGA 220
            +G+K   R    D+  G T  KY +E +K + IAV+ D+  YG+G+A   + S K A A
Sbjct: 132 TRGYKLVMRTTGLDSDQGPTAAKYILEHVKPQRIAVVHDKQQYGEGLARAVQDSLKKAKA 191

Query: 221 TIVGHEFTTDKSTDFNAILTKLKSAKPDVLFFGGMDAVGGPMLKQVKQLGLNVKFMGGDG 280
            +V  E  T    DF+ ++ +LK    D ++FGG     G +L+Q +  G+  KFMG +G
Sbjct: 192 NVVLFEGVTAGDKDFSTLVARLKKENVDFVYFGGYYPEMGQILRQARAAGITTKFMGPEG 251

Query: 281 LCTGELPKLAGDAIGEDMVVCAEAGGVDGDFKQPLED-FKAKFKTKNGVEVQIYAPYV-- 337
           +    L  +AG A  E M+V            QP+ D  KAK     G       P+V  
Sbjct: 252 VGNSSLSNIAG-AASEGMLVTLPKRYDQVPTNQPIVDALKAKKLDSTG-------PFVWT 303

Query: 338 -YDAVNVLAEAMVKAGSSDPEKYLPEVGKVQYKGVTGPIAFDEKGDIK 384
            Y A+  L  AM + GS++P K   ++       V GP+ +DEKGD+K
Sbjct: 304 TYAALQSLTTAMQRTGSTEPAKLAADLKAKSVDTVMGPLNWDEKGDLK 351