Pairwise Alignments

Query, 560 a.a., DNA repair protein RecN from Variovorax sp. SCN45

Subject, 557 a.a., factor used in recombination and DNA repair from Pseudomonas putida KT2440

 Score =  368 bits (944), Expect = e-106
 Identities = 225/559 (40%), Positives = 323/559 (57%), Gaps = 18/559 (3%)

Query: 3   LRRIALRDFVIVRSLELDLSGGFTVLTGETGAGKSILIDALQLALGNRADAGAVREGAER 62
           L  +++ ++ IV  L+L+++ G +V+TGETGAGKSI++DAL LALG+RAD+G VR G ++
Sbjct: 2   LVHLSIHNYAIVEHLDLEIARGMSVITGETGAGKSIMLDALGLALGDRADSGVVRPGTDK 61

Query: 63  LDVSAEFDAD--PALATWLDEGGFEAGDALLLRRTVDLQGRSRGWINGSPATATQLRELG 120
            D+ A FD    P   TWL E   +     +LRR +  +GRSRG+ING+P     L+ LG
Sbjct: 62  ADILATFDLVDIPEAHTWLAERDLDNEGLCILRRVITAEGRSRGYINGTPCPLGDLKALG 121

Query: 121 DRLLDIHGQHAWQSLTRPDAVRGLLDAYAGVRTDA--LDAAWQGWRQALSALEHARSAQD 178
           + L+DIH QH  QSL + D  R LLD YAG    A  +  A + W Q    LE   ++ D
Sbjct: 122 ELLIDIHSQHEHQSLLKTDTHRRLLDEYAGAVDLARQVQLAAKRWNQTRLELERLSNSGD 181

Query: 179 SLQRERERLQWQISEVAKLAPGADEWEELSTNHSRISNAQALIDAA-QGASQALEDEDNG 237
             +   + L +Q+ E+  L  G  E E+L   H  +++A+AL     Q   Q  E +   
Sbjct: 182 EQRARHQLLSYQLEELDNLGLGEHELEQLEQEHKNLTSAEALFGICRQVIDQCSESDSGN 241

Query: 238 ALSALSRAAALLKNCEHIEPEFRNLGEVLASCVAQASDAAHSLHGYLRDAEADPQSLAEL 297
            LSAL+ +   L    +          ++AS   Q  +A   L+ +L + +ADP  L  L
Sbjct: 242 VLSALTSSLNRLGAATNSPKALSEAANLIASAQIQVEEAVGELNRFLDNFDADPIRLQAL 301

Query: 298 DERMGLWMSLARRYKRTPAELPALLAGWQSELQALDAQSD-LDGLERAEQSAQQAYMKEA 356
           +ER+    +LAR+++  P ELP L      EL+ L+A  + ++ L     +  Q Y ++A
Sbjct: 302 EERLDTIYTLARKHRVHPTELPHLQQQLMEELEGLNASDESIERLGEELAAYAQHYKEKA 361

Query: 357 KALGKSRKQAAPRLAQAVTEAMQGLGMKGGRFEVDLQPLAQPGRA----GLEEIAFLVAG 412
           + L   R+QAA +LA AV + +Q LGM GGRF ++L   A  G      GLE+I  LV+ 
Sbjct: 362 RELSGLRQQAAQQLAGAVEQEIQRLGMPGGRFCIELT--ANEGTELSPHGLEQIELLVSA 419

Query: 413 HTGSTPRAIGKVASGGELSRIALAIAVTTSQLGAAQTLIFDEVDAGVGGAVAETVGRLMK 472
           + G   +A+ KVASGGELSRI+LAI V T+Q     TL+FDEVD G+GG  AE VG+L++
Sbjct: 420 NPGQPLKALAKVASGGELSRISLAIQVITAQTSRIPTLVFDEVDVGIGGPTAEIVGQLLR 479

Query: 473 QLGRDRQVLAVTHLPQVAACADHHLVVAKRQTAAAGKEGPRTESGVSRLDEDNRAKEIAR 532
           +LG   QVL VTHLPQVAA   HHL V K       +    T + V+ L +  R +E+AR
Sbjct: 480 RLGERGQVLTVTHLPQVAAQGHHHLFVHK------VRNSDTTHTAVASLGKRERVEEVAR 533

Query: 533 MLGGEKVSQTSLAHAREML 551
           MLGG  +++ SLAHAR+M+
Sbjct: 534 MLGGIDLTKESLAHARKMV 552