Pairwise Alignments

Query, 316 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 336 a.a., dipeptide ABC transporter - putative membrane subunit from Pseudomonas putida KT2440

 Score =  239 bits (610), Expect = 7e-68
 Identities = 127/333 (38%), Positives = 197/333 (59%), Gaps = 21/333 (6%)

Query: 1   MSLFLFKRLATLIGTLIGASVIVFLVLEILPGNAAQMLMGPD-ASPEAVAALATKLGLDQ 59
           M  F+ +RL  LI T  G +++ F ++ ++PG+  +++MG     PE  A    +LGL++
Sbjct: 1   MLSFIARRLGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60

Query: 60  PAWTRYWHWIGGLLTGNLGDSYAYSSPVLDLILERLALTMPLALLAMFFTTVIALLVGVT 119
           P   +Y  ++G L  G+LG+S      V    L     T+ LA  A+ F  V+ LL GV 
Sbjct: 61  PLPVQYLDYVGKLAQGDLGESLRTRESVWREFLTLFPATLELAFAALLFAGVVGLLAGVI 120

Query: 120 AAARHNKLGDVGLMGMAQVGIAIPNFWFAILLILVFSVKLQWFSAGG------------- 166
           AA +   L D G+MG++  G ++P FW+ ++LI+ FSV L W    G             
Sbjct: 121 AALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPKTG 180

Query: 167 -------FEGWGDGFFSGIKSLLLPALSLAVVQAAILARITRSAVLEVMREDFVRTARAK 219
                         F   +  L+LPA+ L  +  A++AR+TRS++LEV+RED++RTARAK
Sbjct: 181 FMLIDTLLSDEEGAFKDAVMHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAK 240

Query: 220 GVSQRMVLWTHVLRNAMIPVITVMGMQFSELLAGTIVVENVFYLPGLGRLIFQAISNRDL 279
           G+S   V++ H LRNA+IPV+TV G+Q   LLAG ++ E +F  PG+G+ + +AI  RD 
Sbjct: 241 GLSPARVVFVHGLRNALIPVLTVFGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDY 300

Query: 280 IVVRNCVMLLAAMVVIVNFVVDVLYAVIDPRIK 312
            VV+N ++L+A +V++VNFVVD+LY + +PRI+
Sbjct: 301 PVVQNGILLIACLVILVNFVVDILYGLANPRIR 333