Pairwise Alignments

Query, 495 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  136 bits (342), Expect = 2e-36
 Identities = 138/516 (26%), Positives = 216/516 (41%), Gaps = 69/516 (13%)

Query: 5   RTLLTTAGATVALATPLAGMAQGRKDAIVIGMALEPPGLDPTSGAAAAIAEVVQYNILET 64
           + LL  AG    +  PLA  A      +V      P G DP+   +    +     +   
Sbjct: 7   KPLLLAAGLLACM--PLAQAAS----TLVYCSEASPAGFDPSQYTSGTDFDASAETVFNR 60

Query: 65  LTKINADGS-VTPLLADSWEVSPDLKTYTFKLKRGVKYQNGE------PFNAAAVKFSFD 117
           LT+    G+ V P LA SW++S D  TYTF L+ GVK+   +       FNA  V F+F+
Sbjct: 61  LTQFKRGGTEVEPGLATSWDISQDGLTYTFHLRDGVKFHTTDFFSPTRDFNADDVLFTFN 120

Query: 118 RAGSEKSTNKDKR-------TFANLSTQV-----VDDYTVVVINKEIDPDLPFVLGQA-- 163
           R    +S  +          T   L+T +     +DD+TV      +D      L  +  
Sbjct: 121 RLLDAQSPFRQAYPSESPYFTDMGLNTTIKSVDKLDDHTVRFNLNNVDASFVQNLAMSFA 180

Query: 164 -------TAVIVEPKSAEGNATKPVGTGPYKLDNWAKGSSITLSKWEGFRSPATAKINKV 216
                   A +++   AE    KPVGTGP+    + K S I     + +  P   K++ +
Sbjct: 181 SVQSAEYAAQLLKQGKAEEINQKPVGTGPFVFKRYQKDSQIRYVANKQYWKPEDVKLDNL 240

Query: 217 TFRFISDTAAQAAAVLSGDIDV--FPRIGTRVVPQFKMNPQFQVILAGSRAKTILSINNR 274
            F    D A++   + +G+  V  +PR     +   K +P   V+         L+ N  
Sbjct: 241 VFAITPDAASRLQKLKAGECQVSGYPRPAD--IEVMKQDPNLHVLQQAGFNLGFLAYNVT 298

Query: 275 KKPLDDVRVRRAILAAIDRKAVIEGAADGFGVPIGSHYVPGAAGYVDTTGINPFDIEKAK 334
             PLD ++VR+A+  AID+ A+I+      G    +   P    Y  T    P+D  KAK
Sbjct: 299 HPPLDQLKVRQALDMAIDKPAIIKAVYQSAGQLAQNALPPAQWSYDPTIKDAPYDPTKAK 358

Query: 335 KLLAEAGVK--TPLEL-KMTL--PPPPYARQGGEVIVAELAKIGIVVKVQNVEWAQWL-- 387
            LL EAGV   T + L  MT+     P AR   ++I  +  K+GI   + + EW +++  
Sbjct: 359 ALLKEAGVAPGTTVNLWAMTVQRASNPNARMSAQMIQQDWEKVGIKANIVSYEWGEYIKR 418

Query: 388 -------------SGTYGNKDYDLSIVSHVEPFDLGNYAKSDYYWGYQSKAFDTLFDKIK 434
                        +G  G+ D  L ++         NYAK      + + A+D L  + K
Sbjct: 419 AKNGEHDAMIYGWTGDNGDPDNWLGVLYSCAAVKGSNYAK------WCNPAYDKLVQQAK 472

Query: 435 TTANTAERNKLLGDAQKML-----ATDAANGFLYQP 465
            + +  +R K    AQK+L      T  AN  ++QP
Sbjct: 473 VSNDREQRIKWYQQAQKILKEQVPITPIANSTVFQP 508