Pairwise Alignments

Query, 495 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  145 bits (365), Expect = 5e-39
 Identities = 138/510 (27%), Positives = 215/510 (42%), Gaps = 72/510 (14%)

Query: 22  AGMAQGRKDAIVIGMAL-----EPPGLDPTSGAAAAIAEVVQYNILETLTKINADGS-VT 75
           AG+  G   A+     +      P G DP         +     +   LT+    G+ V 
Sbjct: 13  AGLLSGAPSAVAASNLVFCSEGSPAGFDPGQYTTGTDFDASAETVFNRLTQFERGGTAVI 72

Query: 76  PLLADSWEVSPDLKTYTFKLKRGVKYQNGE------PFNAAAVKFSFDRA-GSEKSTNKD 128
           P LA  WEVS D KTYTF L+ GVK+   +      PFNA  V F+F+R    +    K 
Sbjct: 73  PGLATKWEVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADDVLFTFNRMLDKDNPFRKA 132

Query: 129 KRTFANLSTQVVDDYTVVVINKEIDPDLPFVLGQATAVIVEP--------KSAE------ 174
             T     T +  D  +  + K  +  + F L +  A  ++         +SAE      
Sbjct: 133 YPTEFPYFTDMGMDKNIAKVEKLDEHTVKFTLNEVDAAFIQNLAMSFASIQSAEYADQLL 192

Query: 175 --GNAT----KPVGTGPYKLDNWAKGSSITLSKWEGFRSPATAKINKVTFRFISDTAAQA 228
             G A     KP+GTGP+    + K + I     + +  P   KI+ + F   +D + + 
Sbjct: 193 KNGKAADINQKPIGTGPFVFSKYQKDAQIRFKGNKDYWQPEDVKIDNLIFAITTDASVRM 252

Query: 229 AAVLSGDIDV--FPR---IGTRVVPQFKMNPQFQVILAGSRAKTILSI---NNRKKPLDD 280
             +   +  V  FPR   I      +    PQ      G  A  ++     +N   P+  
Sbjct: 253 QKLKKNECQVTLFPRPADIEPLKADKNLQMPQQAGFNLGYIAYNVMDKIKGSNEANPMAQ 312

Query: 281 VRVRRAILAAIDRKAVIEGAADGFGVPIGSHYVPGAAGYVDTTGINPFDIEKAKKLLAEA 340
           ++VR+A+  A+D+K +IE    G G    +   P    Y D+     FD EKAK+LL EA
Sbjct: 313 LKVRQALDMAVDKKKIIESVYQGAGQLAVNAMPPTQWSYDDSIKDAAFDPEKAKQLLKEA 372

Query: 341 GVKTPLELKMTLPP-----PPYARQGGEVIVAELAKIGIVVKVQNVEWAQWL-------- 387
           G+K   E+ +   P      P A+   E++ ++ AKIGI  K+ + EW +++        
Sbjct: 373 GIKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGIKAKIVSYEWGEYIKRSKGGEQ 432

Query: 388 -------SGTYGNKDYDLSIVSHVEPFDLGNYAKSDYYWGYQSKAFDTLFDKIKTTANTA 440
                  SG  G+ D  L  +   +  D  N++K    W Y  K +D L  + K T++ A
Sbjct: 433 GAMLIGWSGDNGDPDNWLGTLYGCDAVDGNNFSK----WCY--KPYDDLIKQAKATSDQA 486

Query: 441 ERNKLLGDAQKML-----ATDAANGFLYQP 465
           +R +L   AQ +L      T  A+  +YQP
Sbjct: 487 KRTELYQKAQHILKEQVPITPIAHSTVYQP 516