Pairwise Alignments

Query, 313 a.a., RNA polymerase sigma factor RpoH from Variovorax sp. SCN45

Subject, 288 a.a., RNA polymerase sigma factor RpoH from Rhodanobacter sp000427505 FW510-R12

 Score =  263 bits (671), Expect = 5e-75
 Identities = 152/304 (50%), Positives = 192/304 (63%), Gaps = 17/304 (5%)

Query: 10  NQLAVANPWSMVPPLGNLDAYISAANRLPMLTLEEEQGFARKLRDQNDLESAGALVLSHL 69
           +Q     P ++   +G+LDAYISA +R+P+L+ EEEQ  +R   ++ +L +A  LV+SHL
Sbjct: 2   SQALAITPSNLPSVVGSLDAYISAVHRIPVLSQEEEQALSRDYLEEANLAAAKKLVMSHL 61

Query: 70  RLVVSISRQYLGYGLPHGDLIQEGNVGLMKAVKRFDPDQGVRLVSYAMHWIKAEIHEYIL 129
           R VV ++R Y GYGL   DLIQEGN+GLMKAVKRFDPDQGVRLVS+A+HWI+AE+HE+IL
Sbjct: 62  RFVVHVARGYSGYGLQLADLIQEGNIGLMKAVKRFDPDQGVRLVSFAVHWIRAEMHEFIL 121

Query: 130 KNWRMVKVATTKAQRKLFFNLRSMKQGFKADSAAADNGTHRETLSPDEVSQMATRLNVKP 189
           KNWR+VKVATTKAQRKLFFNLR  K+     +AA             EVS +A  L V  
Sbjct: 122 KNWRIVKVATTKAQRKLFFNLRKSKKRLGWMNAA-------------EVSTVAKDLGVPE 168

Query: 190 EEVLEMETRLSGGDVMLDPGPSDDGEEAFGPIAYLADATQEPTALLESQQRDRLSSDGIA 249
             V EME+RLSG D+  +     D +    P A+L D   +P   +  +       + + 
Sbjct: 169 ATVREMESRLSGRDIGFEAPVDADDDAKPAPAAFLVDDGADPYQNVADEDYADNQMETLN 228

Query: 250 TALEALDDRSRRIVEERWLKVNDDGSGGMTLHDLAAVYGVSAERIRQIEVAAMKKMKKAL 309
            AL  LD RSR I++ RWL    D S   TL DLA  YGVSAERIRQIE  AMKKM+   
Sbjct: 229 DALAHLDPRSRDIIQRRWL----DDSSKATLQDLADEYGVSAERIRQIEANAMKKMRGLF 284

Query: 310 ADYA 313
           A  A
Sbjct: 285 ATAA 288