Pairwise Alignments

Query, 293 a.a., Cytochrome c oxidase polypeptide III (EC 1.9.3.1) from Variovorax sp. SCN45

Subject, 272 a.a., cytochrome c oxidase subunit 3 from Magnetospirillum magneticum AMB-1

 Score =  200 bits (508), Expect = 3e-56
 Identities = 117/284 (41%), Positives = 158/284 (55%), Gaps = 33/284 (11%)

Query: 10  PYYFVPGPSAYPVSAAIGLFFVILGAAQWINGHAWGAWSLLAGMVIWLGTLFVWFRAAIG 69
           P++ V  PS +P+  +I    ++ GA  W   HA  +  +LAG+ +   T+F W+R    
Sbjct: 17  PFHLVD-PSPWPLVGSISALVLVYGAVSWFRDHAHTS-VMLAGLGLVAITMFGWWRDIFR 74

Query: 70  ESESGQ-YGHKVDLSFRWSMSWFIFSEVMFFGAFFTALWWARTHALPTLGSLDNAILWPD 128
           E+ +G  +   V    R  MS FI SEVMFF AFF    WA  H+   LG       WP 
Sbjct: 75  EARAGHAHTEAVCHGLRMGMSLFIASEVMFFVAFF----WAYFHS--ALGIAPMVSQWP- 127

Query: 129 FKAVWPSVAAGATGSPAGIVEPFQTVGPFWLPTINTALLLSSGVTLTIAHHALRAGHRAQ 188
                          P+GI    QT+  + +P INT +L+SSGVTLT +HHALR GHR  
Sbjct: 128 ---------------PSGI----QTLDTWHIPFINTLILMSSGVTLTKSHHALRHGHRGA 168

Query: 189 TIRFMWMTVLLGLIFLGVQAYEYHHLYTELNLKLSSGTYGSTFFMLTGFHGLHVFIGMLM 248
           T  ++ +T+ LG++FL +Q +EY           + G Y S F+M TGFHG HVF+G+  
Sbjct: 169 TKAWLAVTIALGVLFLSLQIHEYGQAL----FAFTDGIYPSVFYMATGFHGFHVFVGVCF 224

Query: 249 LLFITLRLRKGHFTPERHFGFEGAAWYWHFVDVVWLGLYMLVYW 292
           L     R+R G FTP +H GFE AAWYWHFVDVVW+ L++ VYW
Sbjct: 225 LTVCLNRVRVGDFTPAKHVGFEAAAWYWHFVDVVWVFLFVWVYW 268