Pairwise Alignments

Query, 546 a.a., Cytochrome c oxidase polypeptide I (EC 1.9.3.1) from Variovorax sp. SCN45

Subject, 672 a.a., cytochrome bo terminal oxidase subunit I from Pseudomonas putida KT2440

 Score =  401 bits (1031), Expect = e-116
 Identities = 211/517 (40%), Positives = 304/517 (58%), Gaps = 14/517 (2%)

Query: 30  WRRWVFATNHKDIGTLYLLFSFTMLMVGGVLALLIRAELFQP---GLQLVNPELFNQFTT 86
           W  W+   +HK IG +Y++ +  ML+ G   A+++R +L          + PE ++Q  T
Sbjct: 45  WSEWLTTVDHKKIGVMYIIVAMVMLLRGFADAIMMRTQLAAATGGSEGYLPPEHYDQIFT 104

Query: 87  MHGLIMVFGAIMPAFVGFANWMIPLQVGASDMAFARMNNFSFWLLIPAALMLVGSFFMPG 146
            HG+IM+    MP F G  N  +PLQ+GA D+AF  +N+ SF+LL+ A ++LV      G
Sbjct: 105 AHGVIMIIFMAMPFFTGLMNLAVPLQIGARDVAFPFLNSLSFYLLL-AGVLLVNISLGVG 163

Query: 147 GAPAAGWTLYAPLT-LQMGPSM--DAGIFAMHIMGASSIMGSINIIVTILNMRAPGMTLM 203
                GW  Y PL  +Q  P +  D  I+A+ + G  + +  +N +VT++ MRAPGM LM
Sbjct: 164 EFAKTGWVAYPPLAGIQYSPGVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLM 223

Query: 204 KMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRHFGTSFFNPAGGGDPVMYQHIFWFFG 263
            MP+F WT      L++A  P+L  A+ +   DR+     F    GG+P+MY ++FW +G
Sbjct: 224 DMPIFTWTCTWANVLIVASFPILTAALALLTVDRYLDFHIFTNELGGNPMMYVNLFWAWG 283

Query: 264 HPEVYIMILPAFGIISQVVPAFARKKLFGYASMVYATSSIAILSFIVWAHHMFTTGMPLT 323
           HPEVYI+ILPAFG+ S+V   F+ K+LFG+ SM+YA+ +IAIL F VW HH FT G   +
Sbjct: 284 HPEVYILILPAFGVFSEVTSTFSGKRLFGHHSMIYASGAIAILGFAVWLHHFFTMGAGAS 343

Query: 324 GQLFFMYATMLIAVPTAVKIFNWIATMWQGSMTFETPMLFAVGFIFVFTMGGFTGLILAV 383
              FF  ATMLI++PT VK+FNW+ TM+QG + F  PML+ +GF+  F++GG TG++LAV
Sbjct: 344 VNTFFGLATMLISIPTGVKLFNWLFTMYQGRVRFTAPMLWTLGFMVTFSIGGMTGVLLAV 403

Query: 384 APIDTQLQDTYYVVAHFHYVLVAGSLFAMFSGFYYWVPKWTGVMYNETRGKVHFWWSLIS 443
              D  L ++ +V+AHFH V++ G++F   +GF +W PK  G   NE  GK  FW+ L  
Sbjct: 404 PGADFVLHNSLFVIAHFHNVIIGGAVFGYIAGFAFWFPKAFGFTLNEKWGKAAFWFWLSG 463

Query: 444 FNVTFFPMHFLGLAGMPRR--YADYPMQFADFNAVASVGA--FFFGFAQVYFFLFVVFPT 499
           F V F P++ LG  GM RR  ++D P+ +  +  VA VGA    FG A       VV   
Sbjct: 464 FYVAFMPLYALGFMGMTRRLNHSDNPL-WEPYLYVAVVGAVLILFGIA-CQLIQIVVSVR 521

Query: 500 MRGKGEKAAQKPWEGAEGLEWEVPSPAPFHTFENPPK 536
            R +       PW G   LEW   SP PF+ F + P+
Sbjct: 522 DRNQNLDVTGDPW-GGRTLEWSTSSPPPFYNFAHMPE 557