Pairwise Alignments

Query, 546 a.a., Cytochrome c oxidase polypeptide I (EC 1.9.3.1) from Variovorax sp. SCN45

Subject, 529 a.a., Cytochrome c oxidase subunit 1 from Pseudomonas putida KT2440

 Score =  786 bits (2029), Expect = 0.0
 Identities = 365/538 (67%), Positives = 433/538 (80%), Gaps = 11/538 (2%)

Query: 1   MSAVLDPHGHAVPGGHAHDEHHDHHAPTGWRRWVFATNHKDIGTLYLLFSFTMLMVGGVL 60
           MSAV+D H H       HD  H H    G  RWV  TNHKDIGT+YL FSF M ++GG  
Sbjct: 1   MSAVIDDHAHG------HD--HAHGPAKGLMRWVLTTNHKDIGTMYLWFSFIMFLLGGSF 52

Query: 61  ALLIRAELFQPGLQLVNPELFNQFTTMHGLIMVFGAIMPAFVGFANWMIPLQVGASDMAF 120
           A++IRAELFQPGLQ+V P  FNQ TTMHGLIMVFGA+MPAFVG ANWMIPL +GA DMA 
Sbjct: 53  AMVIRAELFQPGLQIVEPAFFNQMTTMHGLIMVFGAVMPAFVGLANWMIPLMIGAPDMAL 112

Query: 121 ARMNNFSFWLLIPAALMLVGSFFMPGGAPAAGWTLYAPLTLQMGP-SMDAGIFAMHIMGA 179
            RMNNFSFWLL  A L+LV + F PGG P  GWT YAPL+    P S+   IFA+H+MG 
Sbjct: 113 PRMNNFSFWLLPAAFLLLVSTLFSPGGGPNFGWTFYAPLSTTYAPASVTFFIFAIHLMGI 172

Query: 180 SSIMGSINIIVTILNMRAPGMTLMKMPMFCWTWLITAYLLIAVMPVLAGAITMTLTDRHF 239
           SSIMG+IN+I TILN+RAPGMTLMKMP+F WTWLITA+LLIAVMPVLAG +TM L D HF
Sbjct: 173 SSIMGAINVIATILNLRAPGMTLMKMPLFVWTWLITAFLLIAVMPVLAGVVTMMLMDIHF 232

Query: 240 GTSFFNPAGGGDPVMYQHIFWFFGHPEVYIMILPAFGIISQVVPAFARKKLFGYASMVYA 299
           GTSFF+ AGGGDPV++QH+FWFFGHPEVYIMILPAFG +S ++PAF+RK LFGY SMVYA
Sbjct: 233 GTSFFSAAGGGDPVLFQHVFWFFGHPEVYIMILPAFGAVSSIIPAFSRKPLFGYTSMVYA 292

Query: 300 TSSIAILSFIVWAHHMFTTGMPLTGQLFFMYATMLIAVPTAVKIFNWIATMWQGSMTFET 359
           T +IA LSFIVWAHHMF  G+P+ G+LFFMYATMLIAVPT VK+FNW++TMW+GS+TFET
Sbjct: 293 TGAIAFLSFIVWAHHMFVVGIPVVGELFFMYATMLIAVPTGVKVFNWVSTMWEGSLTFET 352

Query: 360 PMLFAVGFIFVFTMGGFTGLILAVAPIDTQLQDTYYVVAHFHYVLVAGSLFAMFSGFYYW 419
           PMLFA+ F+ +FT+GGF+GL+LA+AP D Q  DTY+VVAHFHYVLV G++F +F+  YYW
Sbjct: 353 PMLFAIAFVILFTIGGFSGLMLAIAPADFQYHDTYFVVAHFHYVLVPGAIFGIFASAYYW 412

Query: 420 VPKWTGVMYNETRGKVHFWWSLISFNVTFFPMHFLGLAGMPRRYADYPMQFADFNAVASV 479
           +PKWTG MY+ET GK+HFW S +  N+ FFPMHF+GLAGMPRR  DY +QFADFN V+S+
Sbjct: 413 LPKWTGHMYDETLGKLHFWLSFVGMNMAFFPMHFVGLAGMPRRIPDYNLQFADFNMVSSI 472

Query: 480 GAFFFGFAQVYFFLFVVFPTMRGKGEKAAQKPWEGAEGLEWEVPSPAPFHTFENPPKL 537
           GAF FG  Q+ FFLF+V   +RG G  A  KPW+GAEGLEW +PSPAP+HTF+ PP++
Sbjct: 473 GAFMFGATQI-FFLFIVIKCIRG-GAPAPAKPWDGAEGLEWSIPSPAPYHTFQTPPEV 528