Pairwise Alignments

Query, 604 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 611 a.a., microcin C transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  430 bits (1105), Expect = e-124
 Identities = 246/597 (41%), Positives = 348/597 (58%), Gaps = 22/597 (3%)

Query: 9   LMVC-AVPAWAA--HGYALWDDL-KYGPDFKAFDYVDPAAPKGGELRLVSNLRVSTFDKY 64
           L+ C ++PA AA  H   L+D+  KY  DFK FDYV+P APKGG  R  S      FD  
Sbjct: 15  LLACLSLPALAAPQHALTLYDEPPKYPADFKHFDYVNPDAPKGGTFRQSS---FGGFDSL 71

Query: 65  NPFTIKGSAPAYLDSLLFDTLLTGSMDETASGYGLLAEDVTVAPDRRSVTFRLRPEARFH 124
           NPF  KG A   +  +++DTL+  S DE  + YGL+A  +  APD   V F LRPEARFH
Sbjct: 72  NPFINKGVAAENI-GIIYDTLMRQSQDEPFTEYGLVAGKIEKAPDNSWVRFYLRPEARFH 130

Query: 125 NGMPVEAADVKHSYDTLIGPYTSPGYKTLLQEVDGADVIDARTIRFRFKTPN-RELPLIV 183
           +G P+ A DV  +++ LI    +P Y+    +V      +   + F+FK  N RELPLI+
Sbjct: 131 DGHPMRADDVVFTFNALIKD-GAPLYRQYYADVAEVVAEEPLKVLFKFKHKNNRELPLIL 189

Query: 184 GSLPIFSRAWGVENGKAKPFDQVVMDIPIGSGAYKIGPVRFGKDITYVRDPGYWARDLPV 243
           G LP+  + W  EN   + F++  ++IP+GSG YK+  V+ G+ + Y R   YWA+DLP+
Sbjct: 190 GQLPVLPKHW-YEN---REFNRGNLEIPLGSGPYKVAKVKAGRSVRYERVKDYWAKDLPI 245

Query: 244 NRGSHNFDRITVKIYKDNTARLEALKAGEFDMMSFYSAGDWARRVNGKRFNTGELVKREF 303
           NRG +NFD +T   Y+D T  LEALKAG FD     SA +WA   N      G L+K E 
Sbjct: 246 NRGFYNFDAMTFDAYRDTTVALEALKAGAFDYGLEVSAKNWATAYNVPAVREGRLIKEEL 305

Query: 304 QHKKPAGFQSFVLNSRRDKLKDPRVREALGLALDYEWMNRQMFYGGYPRVTDLFGNTDCE 363
            +  P G Q F+ N RR   +D RVR+AL L LDYEW N+Q+F G Y R    F N++  
Sbjct: 306 PNGNPTGMQGFIFNIRRPVFQDVRVRQALSLLLDYEWTNKQLFNGAYTRTGSYFENSEMA 365

Query: 364 AKGLPSPEEKALLEPWRGKIPDASFGPMYTPPTTEGEGHSLRNNLRRARDLLKEAGWEYR 423
           A+GLPSP E  +LEP RGK+P+  F  ++  P ++G G  +R   R+A  LL+EAGW+  
Sbjct: 366 ARGLPSPNELKILEPLRGKVPEQVFTEVFHNPVSDGSG-MIREQQRQAYKLLQEAGWKIV 424

Query: 424 DGALRNAKGERMTLEYLDSKEGGVRTVSPWVRNLEKLGITLNFATVDFALYQERLDRFDF 483
           D  + +A+G+  ++E+L ++    R + P+ RNL  LGI LN   VD + Y  RL   D+
Sbjct: 425 DDKMVDAQGKPASIEFLLAQTEFERILLPFKRNLADLGIELNIRRVDVSQYITRLRSRDY 484

Query: 484 DITTINFPGTNNPGQSLLEIFGSKAAKTESSGNYMGVSTPAIDALLKDIVDADTKAELMP 543
           D+    +P +N+PG    E + S AA    S N++G+  PAID L+  +++AD++  L+ 
Sbjct: 485 DMIVGGYPQSNSPGNEQREFWSSAAADNPGSRNFIGLRDPAIDQLVDQLINADSRQSLID 544

Query: 544 ACRALDRVIMHSHYLIPQWTLTSHRIVYDDW-RLSFKSPMPPYAGGEDWVMGTWWAK 599
            CRALDRV++  +Y+IP W + + R+ Y  W  +   +  P Y  G D    TWW K
Sbjct: 545 HCRALDRVLLWGYYVIPNWHIKTWRVAY--WNHIGHPNVSPKYDIGID----TWWIK 595