Pairwise Alignments

Query, 604 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 524 a.a., nickel ABC transporter periplasmic binding protein from Pseudomonas putida KT2440

 Score = 73.2 bits (178), Expect = 3e-17
 Identities = 97/428 (22%), Positives = 167/428 (39%), Gaps = 72/428 (16%)

Query: 66  PFTIKGSAP--AYLDSLLFDTLLTGSMDETASGYGLLAEDVTVAPDRRSVTFRLRPEARF 123
           P   +G +P   Y  +++++ L+  +   T   +  LAE   V+ D ++ TF LR   RF
Sbjct: 46  PLDPRGYSPNQMYAQAMVYEPLVRYTAAGTLEPW--LAEAWQVSDDGKTYTFTLRDGVRF 103

Query: 124 HNGMPVEAADVKHSYDTLIGPYTSPGYKTLLQEVDGADVIDARTIRFRFKTPNRELPLIV 183
            +G P +A   K + D ++       +  L+  +D  +  +  T+R   K P     + +
Sbjct: 104 SDGTPFDAPAAKANLDAVLANTQRHRWMELVTTLDHVEAPERLTLRLVLKHPYYPTLMEL 163

Query: 184 GSLPIFSRAWGVENGKAKPFDQVVMDIPIGSGAYKIGPVRFGKDITYVRDPGYWARDLPV 243
             +    R     + +AKP        P G+G +     R G+   +VR+P YW      
Sbjct: 164 AQV----RPLRFASPQAKPGQ------PAGTGPWMRAESRLGEYDRFVRNPQYWG----- 208

Query: 244 NRGSHNFDRITVKIYKDNTARLEALKAGEFDMMSFYSAGDWARRVNGKRFNTGELVKREF 303
                 +  + VK+  D  +R  AL+AGE +++   +AG+            G  V+   
Sbjct: 209 --PKPAYGEVMVKVIPDPNSRALALQAGEVELIQ-GAAGE---------ITAGTFVRLRD 256

Query: 304 QH-----KKPAGFQSFVLNSRRDKLKDPRVREALGLALDYEWMNRQMFYGGYPRVTDLFG 358
           Q        P   ++  +N+ R   +D  VR+A+  A+D + +  ++ YG  PR   LF 
Sbjct: 257 QGYATALSAPLATRTLAMNTGRGATRDLAVRQAINEAVDKQAIIDKILYGLEPRADTLFA 316

Query: 359 NTDCEAKGLPSPEEKALLEPWRGKIPDASFGPMYTPPTTEGEGHSLRNNLRRARDLLKEA 418
           +          P     L+P+            Y P               RA   L  A
Sbjct: 317 SN--------MPYADIGLKPY-----------PYDP--------------ARAAHALDAA 343

Query: 419 GWEYRDGA-LRNAKGERMTLE--YLDSKEGGVRTVSPWVRNLEKLGITLNFATVDFALYQ 475
           GW    GA +R+  GE + +E  +L +              L K+GI ++   V+     
Sbjct: 344 GWTLAPGASVRSKGGEPLAIELVFLGTSALQKSLAEVLQGELAKIGIHIDLRAVEEGALV 403

Query: 476 ERLDRFDF 483
            R    DF
Sbjct: 404 RRQRDGDF 411