Pairwise Alignments

Query, 604 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 642 a.a., putative ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

 Score =  348 bits (893), Expect = e-100
 Identities = 212/603 (35%), Positives = 315/603 (52%), Gaps = 17/603 (2%)

Query: 4   LWA--WSLMVCAVPAWAAHGYALWDDL-KYGPDFKAFDYVDPAAPKGGELRLVSNLRVST 60
           LW   +S +   V A   H   ++ +  +Y   F+ FDYV+P+APKGG LR  S + +  
Sbjct: 36  LWGLVFSCIGFTVQAAPTHALTVYGEAPRYAASFRHFDYVNPSAPKGGILRR-SAIEIGQ 94

Query: 61  FDKYNPFTIKGSAPAYLDSLLFDTLLTGSMDETASGYGLLAEDVTVAPDRRSVTFRLRPE 120
           FD   P+  KG   + +D LL+  L   S DE  + YGL+A  +   P+   + F + P 
Sbjct: 95  FDHILPYIDKGIGVSEVDGLLYAPLAVRSYDEPYTVYGLIARRMERGPNDEWLRFDIDPR 154

Query: 121 ARFHNGMPVEAADVKHSYDTLIGPYTSPGYKTLLQEVDGADVIDARTIRFRFKTPN-REL 179
           A F +G PV A DV+ ++D L+    S  Y+T   +V    V    ++RF  K  + R L
Sbjct: 155 ATFADGRPVRAEDVRFTFDLLMSK-GSLKYRTQFADVARVTVERLHSVRFDLKPEHGRTL 213

Query: 180 PLIVGSLPIFSRAWGVENGKAKPF-DQVVMDIPIGSGAYKIGPVRFGKDITYVRDPGYWA 238
            L + SLP+        + + + F +    D P+GSG Y+IG +  G+ IT+ RDP +WA
Sbjct: 214 ALDLASLPVMPE----HDLQQRDFANGAGFDKPVGSGPYRIGRIDNGRSITFERDPAWWA 269

Query: 239 RDLPVNRGSHNFDRITVKIYKDNTARLEALKAGEFDMMSFYSAGDWARRVNGKRFNTGEL 298
           RDLP +RG +NFD++ ++ + D     + LK G +D    +SA  +    NG + + G L
Sbjct: 270 RDLPASRGRYNFDKLRIEYFGDTEVARQVLKGGGYDYNREFSATAYTLGYNGAQLDDGRL 329

Query: 299 VKREFQHKKPAGFQSFVLNSRRDKLKDPRVREALGLALDYEWMNRQMFYGGYPRVTDLFG 358
            +      KP   Q FV N  + + KD RVR+ALG+  D+EW NRQM    Y R   +F 
Sbjct: 330 QRAHLGPAKPQVAQGFVFNLDQPQFKDRRVRQALGMLWDFEWSNRQMMRNLYIRQQSVFS 389

Query: 359 NTDCEAKGLPSPEEKALLEPWRGKIPDASFGPMYTPPTTEGEGHSLRNNLRRARDLLKEA 418
           NT   A+ LP   E  LL P RG++PD  F  ++T P T+G G  +R    +A  LL++A
Sbjct: 390 NTPLAARQLPDAGELKLLAPLRGQVPDEVFTTVFTAPVTDGSG-IIRQQQLQALALLEQA 448

Query: 419 GWEYRDGALRNAKGERMTLEYLDSKEGGVRTVSPWVRNLEKLGITLNFATVDFALYQERL 478
           GW      L N++G  +   +L+ + G  R + PW RNL ++G+TLN   VD A Y  RL
Sbjct: 449 GWHPEGDRLVNSQGTPLAFTFLNGQAGLERLLLPWKRNLAQIGVTLNIRNVDSAQYVNRL 508

Query: 479 DRFDFDITTINFPGTNNPGQSLLEIFGSKAAKTESSGNYMGVSTPAIDALLKDIVDADTK 538
              D+D+    +P T +PG  L   FGS AA    S N M +  PA+D L+  +V ADT+
Sbjct: 509 MARDYDMIVTGYPVTLSPGAELYNYFGSAAAHDPGSNNLMVLQDPAVDHLIDGLVRADTQ 568

Query: 539 AELMPACRALDRVIMHSHYLIPQWTLTSHRIVYDDWRLSFKSPMPPYAGGEDWVMGTWWA 598
           A+++    ALDRV+  ++Y IP +       V+  W    +  +P      D  + TWW 
Sbjct: 569 ADMLRHAHALDRVLQWNYYWIPNYYPPGSSTVW--WN---RFGLPKVQATYDEGLDTWWE 623

Query: 599 KQP 601
             P
Sbjct: 624 VNP 626