Pairwise Alignments

Query, 346 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 336 a.a., dipeptide ABC transporter, permease component (from data) from Pseudomonas simiae WCS417

 Score =  171 bits (434), Expect = 2e-47
 Identities = 112/361 (31%), Positives = 185/361 (51%), Gaps = 41/361 (11%)

Query: 1   VLSYVLKRLLLFIPTLLGVLLVTFLVIQFVPGGPVEQYLAEAKTAGRGGGGGGFESGGGS 60
           + S++ +RL L IPT  G+ L+TF +I+ +PG PVE  + E +                 
Sbjct: 1   MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERR----------------- 43

Query: 61  YRGNQGVDPKRLEQIKALYGFDKPPHERLWQMLGQFARFDLGKSFFQNKDVWTLILEKLP 120
                 VDP+   Q     G +KP + +    +G+ A+ DLG+S      VWT      P
Sbjct: 44  ------VDPEMHAQAMERLGLNKPLYAQYLDYVGKLAQGDLGESLRTRTSVWTEFTALFP 97

Query: 121 VSISLGLWTFFISYGVAVPLGVAKAVRAGTRFDLISTLIVLIGYAIPGFVLGVALLVVFG 180
            ++ L +     +  + +  GV  A++ G+ FD     I L GY++P F  G+ L++ F 
Sbjct: 98  ATLELSMAALLFAGILGLLAGVIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFS 157

Query: 181 GQLQWFPLRGLTSANWD-DLSWGARIVDYL--------W----HITLPVTAMVLGS--FA 225
             L W P+ G     +D +   G  ++D L        W    H+ LP  A+VLG+   A
Sbjct: 158 VSLGWTPVSGRIDLLYDIEPRTGFMLIDTLLADEPDAFWDALHHLILP--AIVLGTIPLA 215

Query: 226 VTAMLTKNAFLEEIRKQYVLTARAKGLGERQVLWKHVFRNALIPIITGLPSAFIGAFFAG 285
           V A +T+++ LE +R+ Y+ TA+AKGL   +V++ H  RNALIP++T +    +G   AG
Sbjct: 216 VIARMTRSSMLEVLREDYIRTAKAKGLSPARVVFVHGLRNALIPVLT-VVGLQVGTLLAG 274

Query: 286 SLLIETLFSLDGLGLLGYESVIRRDYPVVLGTLYLFTLIGLVTKLISDLCYVWVDPRVKF 345
           ++L ET+FS  G+G    E++  RDYPVV   + L   + ++   + D+ Y + +PR++ 
Sbjct: 275 AVLTETIFSWPGIGKWLIEAIGARDYPVVQNGILLIACLVILVNFVVDILYGFANPRIRH 334

Query: 346 E 346
           +
Sbjct: 335 Q 335