Pairwise Alignments

Query, 346 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 358 a.a., microcin ABC transporter permease from Pseudomonas simiae WCS417

 Score =  412 bits (1060), Expect = e-120
 Identities = 197/353 (55%), Positives = 264/353 (74%), Gaps = 8/353 (2%)

Query: 1   VLSYVLKRLLLFIPTLLGVLLVTFLVIQFVPGGPVEQYLA-----EAKTAGRGGGGGGFE 55
           +L+Y+ +RLLL IPTL G+LL+ F++IQ  PGGPVEQ +A     E  T+   GGG    
Sbjct: 1   MLAYIFRRLLLIIPTLFGILLINFVIIQAAPGGPVEQMIAKLEGFEGATSRIAGGGAEVS 60

Query: 56  -SGGGSYRGNQGVDPKRLEQIKALYGFDKPPHERLWQMLGQFARFDLGKSFFQNKDVWTL 114
            +G  SYRG QG+DP  +++I+ +YGFDK   ERLW M+  +A+ D G SFF++  V  L
Sbjct: 61  VAGSSSYRGAQGLDPALIKEIEKMYGFDKSAPERLWIMVKNYAQLDFGDSFFRDAKVIDL 120

Query: 115 ILEKLPVSISLGLWTFFISYGVAVPLGVAKAVRAGTRFDLISTLIVLIGYAIPGFVLGVA 174
           I EK+PVSISLGLW+  I Y V++PLG+AKA R G+ FD+ ++  +++GYAIP F+  + 
Sbjct: 121 IKEKMPVSISLGLWSTLIMYLVSIPLGIAKATRHGSHFDVWTSSAIIVGYAIPAFLFAIL 180

Query: 175 LLVVFGG--QLQWFPLRGLTSANWDDLSWGARIVDYLWHITLPVTAMVLGSFAVTAMLTK 232
           L+VVF G   L WFPLRGLTS N+D+LSWG +I+DY WH+ LP+TA+V+G+FA   +LTK
Sbjct: 181 LIVVFAGGSYLDWFPLRGLTSNNFDELSWGGKILDYFWHLALPITALVIGNFATMTLLTK 240

Query: 233 NAFLEEIRKQYVLTARAKGLGERQVLWKHVFRNALIPIITGLPSAFIGAFFAGSLLIETL 292
           N+FL+EI KQYV+TA+AKGL   +VL+ H+FRNA++ +I G PSAFIG FF GSLL+E +
Sbjct: 241 NSFLDEINKQYVVTAKAKGLTNHRVLYGHIFRNAMLLVIAGFPSAFIGIFFTGSLLVEVI 300

Query: 293 FSLDGLGLLGYESVIRRDYPVVLGTLYLFTLIGLVTKLISDLCYVWVDPRVKF 345
           FSLDGLGL+ +E+ I RDYPVV GTL++FTL+GL+ KLI DL Y  VDPR+ F
Sbjct: 301 FSLDGLGLMSFEAAINRDYPVVFGTLFIFTLLGLIVKLIGDLTYTLVDPRIDF 353