Pairwise Alignments

Query, 346 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 357 a.a., putative inner membrane ABC transporter permease protein from Pseudomonas putida KT2440

 Score =  411 bits (1057), Expect = e-119
 Identities = 196/352 (55%), Positives = 262/352 (74%), Gaps = 7/352 (1%)

Query: 1   VLSYVLKRLLLFIPTLLGVLLVTFLVIQFVPGGPVEQYLA-----EAKTAGRGGGGGGFE 55
           +L+Y+L+RLLL IPTL G+L++ F+++Q  PGGPVEQ +A     E  T+   GGG    
Sbjct: 1   MLAYILRRLLLIIPTLFGILIINFIIVQAAPGGPVEQMIAKLEGFEGATSRIAGGGAEVS 60

Query: 56  SGGGSYRGNQGVDPKRLEQIKALYGFDKPPHERLWQMLGQFARFDLGKSFFQNKDVWTLI 115
             G SYRG QG+DP  + +I+ +YGFDK P ERLW M+  +A+ D G SFF++  V  LI
Sbjct: 61  VAGSSYRGAQGLDPALIAEIERMYGFDKSPPERLWIMVKNYAQLDFGDSFFRDAKVIDLI 120

Query: 116 LEKLPVSISLGLWTFFISYGVAVPLGVAKAVRAGTRFDLISTLIVLIGYAIPGFVLGVAL 175
            EK+PVSISLGLW+  I Y V++PLG+AKAVR G+ FD+ ++  +++GYAIP F+  + L
Sbjct: 121 AEKMPVSISLGLWSTLIMYLVSIPLGIAKAVRHGSHFDVWTSSAIIVGYAIPAFLFAILL 180

Query: 176 LVVFGG--QLQWFPLRGLTSANWDDLSWGARIVDYLWHITLPVTAMVLGSFAVTAMLTKN 233
           +V+F G     WFPLRGLTS N+D+LS   +++DY WH+ LP+TA+V+G+FA   +LTKN
Sbjct: 181 IVLFAGGSYFDWFPLRGLTSNNFDELSTTGKVLDYFWHLVLPITALVIGNFATMTLLTKN 240

Query: 234 AFLEEIRKQYVLTARAKGLGERQVLWKHVFRNALIPIITGLPSAFIGAFFAGSLLIETLF 293
           +FL+EI KQYV+TA+AKGL   +VL+ HVFRNA++ +I G PSAFIG FF GSLLIE +F
Sbjct: 241 SFLDEINKQYVVTAKAKGLSRSRVLYGHVFRNAMLLVIAGFPSAFIGIFFTGSLLIEVIF 300

Query: 294 SLDGLGLLGYESVIRRDYPVVLGTLYLFTLIGLVTKLISDLCYVWVDPRVKF 345
           SLDGLGL+ +E+ I RDYPVV GTL++FTL+GLV KLI DL Y  VDPR+ F
Sbjct: 301 SLDGLGLMSFEAAINRDYPVVFGTLFIFTLLGLVVKLIGDLTYTLVDPRIDF 352