Pairwise Alignments

Query, 346 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 352 a.a., putative ABC transporter permease protein from Pseudomonas putida KT2440

 Score =  397 bits (1020), Expect = e-115
 Identities = 190/346 (54%), Positives = 252/346 (72%), Gaps = 2/346 (0%)

Query: 3   SYVLKRLLLFIPTLLGVLLVTFLVIQFVPGGPVEQYLAEAKTAGRGGGGGGFESGGGSYR 62
           +Y+L+RLLL IPTLL +LLV F ++Q  PGGPVEQ +A  +  G G  G   E   G  R
Sbjct: 3   AYILRRLLLIIPTLLAILLVNFAIVQAAPGGPVEQAVARLQGLGGGAPGARAEVVHGESR 62

Query: 63  GNQGVDPKRLEQIKALYGFDKPPHERLWQMLGQFARFDLGKSFFQNKDVWTLILEKLPVS 122
             +G+DPK +E+IK  YGFDK   ERLW MLGQ+AR D G SFF+   V  LIL+KLPV+
Sbjct: 63  ATRGLDPKLIEEIKRQYGFDKSAPERLWLMLGQYARLDFGNSFFRGAKVTDLILDKLPVT 122

Query: 123 ISLGLWTFFISYGVAVPLGVAKAVRAGTRFDLISTLIVLIGYAIPGFVLGVALLVVFGG- 181
           +SLG W   I+Y V++PLG+ KA+R G+RFD  S+ +++IGYA+P F+  + L+V+F G 
Sbjct: 123 LSLGFWATLITYLVSIPLGIRKAMRHGSRFDAWSSALIVIGYALPSFLFALLLIVLFAGG 182

Query: 182 -QLQWFPLRGLTSANWDDLSWGARIVDYLWHITLPVTAMVLGSFAVTAMLTKNAFLEEIR 240
             L WFP+RGL S N+D+LS   ++ DY WH+ LPV A+V+G FA   +LTKNAFL+E+ 
Sbjct: 183 TSLNWFPVRGLVSDNFDELSLLGKVADYFWHLVLPVAALVIGGFATLTLLTKNAFLDEVS 242

Query: 241 KQYVLTARAKGLGERQVLWKHVFRNALIPIITGLPSAFIGAFFAGSLLIETLFSLDGLGL 300
           +QYV+TARAKGL ER+VL+ HV RNA++ ++ GLP A I  FFAGSLLIE +FSLDGLG 
Sbjct: 243 RQYVVTARAKGLSERRVLYGHVLRNAMLLVVAGLPQALITVFFAGSLLIEVIFSLDGLGR 302

Query: 301 LGYESVIRRDYPVVLGTLYLFTLIGLVTKLISDLCYVWVDPRVKFE 346
           + YE+ + RDYPVV GTL++FTL GL+ +LI DL Y  +DPR+ F+
Sbjct: 303 MSYEAAVSRDYPVVFGTLFIFTLAGLLIRLIGDLSYTLLDPRIDFD 348