Pairwise Alignments

Query, 346 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 339 a.a., dipeptide ABC transporter permease DppB from Dickeya dianthicola ME23

 Score =  176 bits (445), Expect = 1e-48
 Identities = 115/362 (31%), Positives = 181/362 (50%), Gaps = 44/362 (12%)

Query: 1   VLSYVLKRLLLFIPTLLGVLLVTFLVIQFVPGGPVEQYLAEAKTAGRGGGGGGFESGGGS 60
           +L ++L+RL L IPT +G+ L+TF  +  +PG PV                         
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHLIPGDPVM-----------------------I 37

Query: 61  YRGNQGVDPKRLEQIKALYGFDKPPHERLWQMLGQFARFDLGKSFFQNKDVWTLILEKLP 120
             G +G+ P+R  Q+ A  G DKP  ++    +      DLG S      VW   + +  
Sbjct: 38  MAGERGISPERHAQLMAELGLDKPLWDQYLHYINGVLHGDLGMSLKSRIPVWDEFVPRFK 97

Query: 121 VSISLGLWTFFISYGVAVPLGVAKAVRAGTRFDLISTLIVLIGYAIPGFVLGVALLVVFG 180
            ++ LG+     +  V +P+GV  AV+ G+ FD  +  I L GY++P F  G+ L+++  
Sbjct: 98  ATLELGVCAMIFAVIVGIPVGVLAAVKRGSVFDHTAVSIALTGYSMPIFWWGMMLIMLVS 157

Query: 181 GQLQWFPLRGLTSAN--------------WDDLSWGA--RIVDYLWHITLPVTAMVLGS- 223
            QL   P+ G                    D L WGA     D + H+ LP  A+VLG+ 
Sbjct: 158 VQLNLTPVSGRVGDTVFLDDALPLSGFMLIDTLIWGADGDFKDAVMHMVLP--AVVLGTI 215

Query: 224 -FAVTAMLTKNAFLEEIRKQYVLTARAKGLGERQVLWKHVFRNALIPIITGLPSAFIGAF 282
             AV   +T++A LE + + Y+ TARAKGL   +V+  H  RNA++P++T +    +G  
Sbjct: 216 PLAVIVRMTRSAMLEVLGEDYIRTARAKGLSRLRVIVVHALRNAMLPVVTVI-GLQVGTM 274

Query: 283 FAGSLLIETLFSLDGLGLLGYESVIRRDYPVVLGTLYLFTLIGLVTKLISDLCYVWVDPR 342
            AG++L ET+FS  GLG    +++ RRDYPVV   + L   + ++  L+ DL Y  V+PR
Sbjct: 275 LAGAILTETIFSWPGLGRWLIDALQRRDYPVVQSGVLLVATMIILVNLLVDLLYGVVNPR 334

Query: 343 VK 344
           ++
Sbjct: 335 IR 336