Pairwise Alignments

Query, 581 a.a., 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC) from Variovorax sp. SCN45

Subject, 600 a.a., Acyl-CoA dehydrogenase family protein from Pseudomonas putida KT2440

 Score =  292 bits (748), Expect = 2e-83
 Identities = 211/596 (35%), Positives = 300/596 (50%), Gaps = 47/596 (7%)

Query: 7   PEDVRFLLNAVLDAPTRLAALAPFAEVDEALQSQVLEEAGRFVGEVIAPLNRGGDETGCR 66
           P ++ F L  VLDA   L     FAE         L  A     +  AP NR  DE   R
Sbjct: 8   PRNLAFELYEVLDAEA-LTLRPRFAEHSRETFDAALTTARTIAEKYFAPHNRKADENEPR 66

Query: 67  FAGGEVASPPGFREAYQAFVDGGWPALSAAPEDGGQGLPAVLEAVLYEWLAAANHGFTMA 126
           +  G     P  + A  AF++ G+   +   E GG  LP+++         AAN G T  
Sbjct: 67  YVDGRAELIPEVKPAVDAFLEAGFLNANRDFEVGGMQLPSLVSQACIAHFQAANAGTTAY 126

Query: 127 PGLLHGAYACLKHHGSDELKQRYLSKIATGEWLATMCLTEAHAGSDLGQVRTRAVPQADG 186
           P L  GA   ++  GSDE K+ +L  +  G +  TM LTE HAGS L  +RTRA P  DG
Sbjct: 127 PFLTMGAANLIESFGSDEQKRLFLQPMIDGRYFGTMALTEPHAGSSLADIRTRAEPAGDG 186

Query: 187 SVRVSGGKIFISGGEHDLTPNIVHLVLCRLPDAPDGPKGLSLALVPK--LLPDGA---RN 241
           S R+ G KIFISGG+H+L+ NIVH+VL +LPDAP G KG+SL +VPK  + P+G+   RN
Sbjct: 187 SYRLKGNKIFISGGDHELSENIVHMVLAKLPDAPPGVKGISLFIVPKYHVNPNGSRGPRN 246

Query: 242 AVHCERIEEKMGLHGSPTCTMRFDD---ATGWLVGEPGRGLAAMFVMMNSARLHVALQGI 298
            V    +  KMG  G+ +  + F D     G+LVG+P +GLA MF MMN AR+ V +  +
Sbjct: 247 DVLLAGLFHKMGWRGTTSTALNFGDNGQCVGYLVGQPHQGLACMFQMMNEARIGVGMGAV 306

Query: 299 GLLDAAWQKADAYAAERRQMRAPGPVPASRGGES-ADLIAEHPAVRRILDTQRAWIDGAR 357
            L  A +     Y+ E  + R  G +P ++   S A  I EH  V+R+L  Q+A+++GA 
Sbjct: 307 MLGYAGY----LYSLEYARQRPQGRLPDNKDPHSPAVPIIEHTDVKRMLLAQKAYVEGAF 362

Query: 358 ALAYRSALMLDVAAHDADAKARERAQRWCSFVTPVLKAACTQQAFHGASECLQVFGGHGY 417
            L   +A + D      D  AR+ AQ     +TP++K+  +          +Q+ GGHGY
Sbjct: 363 DLGLYAARLFDDTHTAPDENARKPAQDLLDLLTPIVKSWPSAFCLKANELAIQILGGHGY 422

Query: 418 VREWGIEQIVRDSRVTMIYEGTNEIQAIDLLVRKVLPDGGAGMSAVLLELRDTLD-ASRE 476
            RE+ +EQ  RD+R+  I+EGT  IQ++DLL RK+    GAG+  ++  +  T + AS  
Sbjct: 423 TREYPVEQYYRDNRLNPIHEGTEGIQSLDLLGRKLAQHNGAGLKQLIRLIAATCERASHH 482

Query: 477 ADADVQRR-LAQL--RYLGTTVAM----------AAHANPALPYEVADDYLRVAMLTMLA 523
            + D  R+ L QL  R  G T+A+           A AN AL       YL+     ++ 
Sbjct: 483 PNLDPLRQPLEQLANRLQGVTLALLGDLAQGKVAGALANSAL-------YLKAFGHCVIG 535

Query: 524 WAWARIE----------AAAPRDAARARVAAA--FRRWVLPEFEMRLGIVKRACET 567
           W W               AA RD    ++ AA  F  W +P     L +++   +T
Sbjct: 536 WRWLEQAVHAELGMLKGTAADRDFYLGKLQAARYFLTWEVPGCHNELALLEAHDDT 591