Pairwise Alignments

Query, 411 a.a., RNA-2',3'-PO4:RNA-5'-OH ligase from Variovorax sp. SCN45

Subject, 379 a.a., RNA ligase RtcB family protein from Escherichia coli ECOR38

 Score =  113 bits (282), Expect = 1e-29
 Identities = 115/405 (28%), Positives = 176/405 (43%), Gaps = 77/405 (19%)

Query: 29  VEPEAQKQLENAARLPIVFKHIAAMPDVHYGIGATVGSVIPTFKAIIPAAVGVDIGCGMM 88
           +E  A +QL   A LP + + +  MPD+H G G  +G+   +     PA VG DIGCGM 
Sbjct: 22  IESSAIQQLHTTANLPDM-QRVVGMPDLHPGRGYPIGAAFFSVGRFYPALVGNDIGCGMA 80

Query: 89  ACKTTLHANDL-PDNLGPLRSAIEKAVPHGSNPKRMGRDKGSWETPPNETDVAWAALKDE 147
             +T + A     D      SA++                 SW             L++ 
Sbjct: 81  LWQTDIFARKYNADKFEKRLSALDDVAEE------------SW-------------LEEN 115

Query: 148 FDAICEDYPRLKNTNNHKHLGTLGTGNHFIEV-----CLD---------EAGSVWFMLHS 193
             +    +P   +      LG++G GNHF E+      +D         +A  +  ++HS
Sbjct: 116 LPSALAQHPWRSS------LGSIGGGNHFAELQQVDQIIDAELFALTGLDAQHLQLLVHS 169

Query: 194 GSRGVGNAVGTHFIELAKKDAELHQRNLPDQDLAYFEEGARYFGDYVRAVGWAQKFARAN 253
           GSRG+G ++      L +  A      LP        EG+     Y+     A  FAR N
Sbjct: 170 GSRGLGQSI------LQRHIASFSHHGLP--------EGSDDALSYIVEHDDALAFARIN 215

Query: 254 REVMMQRVVAAVRKVIVKPFEAHVEAVNCHHNYVSRETHFGEDVLVTRKGAVSAKAGELG 313
           R+++  R++  V K    P       ++  HN+VS      +   + RKGA     G L 
Sbjct: 216 RQMIALRIMQQV-KATGSP------VLDVAHNFVSACQIGDQQGWLHRKGATPDDNG-LV 267

Query: 314 IIPGSMGAKSFIVRGKGNPESFMSCSHGAGRKMSRTKAKKLFT---IADQIAATE---GV 367
           IIPGS G  S++V+   N ++  S +HGAGRK  RT+ K        A Q++ TE    V
Sbjct: 268 IIPGSRGDYSWLVKPVANEKTLHSLAHGAGRKWGRTECKGRLAAKYTATQLSRTELGSRV 327

Query: 368 ECRKDADVIDEIPMAYKDIDAVME--AQQDLVEVVYTLKQVVCVK 410
            CR    + +E P AYK  ++V++   Q  L+  V  L+ V+ +K
Sbjct: 328 ICRDKQLIFEEAPQAYKSTESVVQCLVQAGLIIPVARLRPVLTLK 372